Public Git Hosting - bioperl-run.git/commit

commit	3ee0b6455f5a028622546ac2872077b0d465a886
author	jason <jason@bioperl.org>
	Sun, 9 Oct 2005 15:19:49 +0000 (9 15:19 -0000)
committer	jason <jason@bioperl.org>
	Sun, 9 Oct 2005 15:19:49 +0000 (9 15:19 -0000)
tree	98d7a87c5c54dce8ed160fb8cc818acc340bf802	tree \| snapshot (tar.gz zip)
parent	93f5e6f5dba36e67e23b423b0f510f736604ea29	commit \| diff

Merged from HEAD to 1.5.1 branch, changes which remove old bug email address and point to bugzilla.bioperl.org website for bug submission

svn path=/bioperl-run/branches/bioperl-run-branch-1-5-1/; revision=13668

320 files changed:

Bio/Factory/EMBOSS.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/Blat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/Clustalw.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/DBA.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/Lagan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/Sim4.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Alignment/StandAloneFasta.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Analysis.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Analysis/soap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/AnalysisFactory.pm		diff \| blob \| blame \| history
Bio/Tools/Run/AnalysisFactory/Pise.pm		diff \| blob \| blame \| history
Bio/Tools/Run/AnalysisFactory/soap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Coil.pm		diff \| blob \| blame \| history
Bio/Tools/Run/EMBOSSApplication.pm		diff \| blob \| blame \| history
Bio/Tools/Run/EMBOSSacd.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Eponine.pm		diff \| blob \| blame \| history
Bio/Tools/Run/FootPrinter.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Genscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phrap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/LVB.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Molphy/ProtML.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/PAML/Baseml.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/PAML/Codeml.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/PAML/Yn00.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Phylip/Consense.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Phylip/Neighbor.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Phylip/ProtDist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Phylo/Phylip/ProtPars.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/abiview.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/addquart.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/align2model.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/alistat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/antigenic.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/assp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/backtranseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/bambe.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/banana.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/bionj.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/biosed.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/bl2seq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/blast2.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/blimps.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/blimps_block.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/blimps_matrix.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/boxshade.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/btwisted.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cai.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cds.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/chaos.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/charge.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/checktrans.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/chips.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cirdna.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/clique.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/clustalw.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/clustalw_convert.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/codcmp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/coderet.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/codnocod.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/codontree.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/codonw.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/comalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/combat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/compseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/con_filter.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/confmat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cons.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/consense.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/consensus.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cpgplot.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cpgreport.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cusp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/cutseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dca.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/decorate.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/degapseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/descseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dialign2.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/diffseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/digest.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/distmat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/distquart.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dnadist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dnapars.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dollop.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/domainer.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dotmatcher.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dotpath.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dottup.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/drawgram.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/drawpyr.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/drawtree.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dreg.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/druid.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dsc.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/dssp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/einverted.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/emma.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/emowse.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/environ.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/eprimer3.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/equicktandem.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/est2genome.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/etandem.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/extractfeat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/extractseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fasta.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fastdnaml.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fastrna.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/filtersites.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/findkm.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fitch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fmtseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/freak.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fuzznuc.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fuzzpro.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/fuzztran.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/gb2xml.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/geecee.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/genscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/getblock.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/getorf.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/gff2ps.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/gibbs.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/gibbs_scan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/golden.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/grailclnt.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/gruppi.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/helixturnhelix.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmbuild.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmcalibrate.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmconvert.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmemit.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmer2sam.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmfetch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmpfam.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmscore.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmmsearch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/hmoment.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/homology.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/html4blast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/iep.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/infoalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/infoseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/interface.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/isochore.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/kitsch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/lassap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/lindna.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/listor.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/loadseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/lvb.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/makehist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/map.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/marscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/maskfeat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/maskseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/matcher.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/megamerger.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/melting.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/merger.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mfold.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mix.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/modelfromalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mreps.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/msa.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/msbar.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mspcrunch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mview_alig.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mview_blast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/mwfilter.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/needle.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/neighbor.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/newcpgreport.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/newcpgseek.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/newseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/njdist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/nnssp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/notseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/nrscope.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/nthseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/octanol.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/oddcomp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/palindrome.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pam.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/parciquart.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pars.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pasteseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/patmatdb.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/patmatmotifs.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/patser.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pdbsearch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepcoil.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepinfo.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepnet.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepstats.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepwheel.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepwindow.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pepwindowall.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pestfind.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pftools.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/phiblast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pima.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/plotcon.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/plotorf.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/plsearch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/polydot.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pratt.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/predator.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/preg.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prettyalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prettyplot.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prettyseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/primersearch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/primo.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prodom.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/profit.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prophecy.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prophet.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prose.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/prot_nucml.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/protal2dna.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/protdist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/protpars.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/psiblast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/psort2.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pyramids.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/pyreval.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/qstar.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/quicktree.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/readnexus.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/readseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/recoder.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/redata.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/remap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/repeats.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/restover.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/restrict.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/revseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnadistance.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnaeval.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnafold.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnaga.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnaheat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnainverse.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnapdist.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/rnasubopt.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sam2hmmer.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sampleseqs.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/saps.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/satellites.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/scan_for_matches.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/scope.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/scopparse.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/seqboot.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/seqgen.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/seqmatchall.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/seqsblast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/seqstat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/showalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/showfeat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/showorf.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/showseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/shuffleseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sigcleave.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/siggen.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sigscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/silent.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sirna.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/splitter.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/sreformat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/stretcher.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/stride.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/stssearch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/supermatcher.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/syco.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/tacg.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/tfscan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/tipdate.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/tmap.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/toppred.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/tranalign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/transeq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/treealign.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/trimest.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/trimseq.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/trnascan.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/twofeat.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/unroot.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/vectorstrip.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/water.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/weighbor.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/whichdb.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/wise2.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/wobble.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/wordcount.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/wordmatch.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/wublast2.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/xblast.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseApplication/xpound.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseJob.pm		diff \| blob \| blame \| history
Bio/Tools/Run/PiseJobParser.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Primate.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Prints.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Profile.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Pseudowise.pm		diff \| blob \| blame \| history
Bio/Tools/Run/RepeatMasker.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Seg.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Signalp.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Tmhmm.pm		diff \| blob \| blame \| history
Bio/Tools/Run/TribeMCL.pm		diff \| blob \| blame \| history
Bio/Tools/Run/Vista.pm		diff \| blob \| blame \| history
scripts/panalysis.PLS		diff \| blob \| blame \| history
scripts/papplmaker.PLS		diff \| blob \| blame \| history

BioPerl wrappers

RSS Atom