3 # BioPerl module for Bio::Network::IO::psi::intact
5 # You may distribute this module under the same terms as perl itself
6 # POD documentation - main docs before the code
10 Bio::Network::IO::psi::intact - module to handle variations
11 in PSI MI format from the IntAct database
15 Do not use this module directly, use Bio::Network::IO. For example:
17 my $io = Bio::Network::IO->new(-format => 'psi',
21 my $network = $io->next_network;
25 There are slight differences between PSI MI files offered by various public
26 databases. The Bio::Network::IO::psi* modules have methods for handling
27 these variations. To load a module like this use the optional "-source"
28 argument when creating a new Bio::Network::IO object.
34 User feedback is an integral part of the evolution of this and other
35 Bioperl modules. Send your comments and suggestions preferably to one
36 of the Bioperl mailing lists. Your participation is much appreciated.
38 bioperl-l@bioperl.org - General discussion
39 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
43 Please direct usage questions or support issues to the mailing list:
45 L<bioperl-l@bioperl.org>
47 rather than to the module maintainer directly. Many experienced and
48 reponsive experts will be able look at the problem and quickly
49 address it. Please include a thorough description of the problem
50 with code and data examples if at all possible.
54 Report bugs to the Bioperl bug tracking system to help us keep track
55 the bugs and their resolution. Bug reports can be submitted via the
58 http://bugzilla.open-bio.org/
62 Brian Osborne bosborne at alum.mit.edu
66 package Bio
::Network
::IO
::psi
::intact
;
68 use vars
qw(@ISA $FAC @EXPORT);
70 use Bio::Annotation::DBLink;
71 use Bio::Annotation::Collection;