Bio/Network/IO/psi/intact.pm

   1 # $Id$
   2 #
   3 # BioPerl module for Bio::Network::IO::psi::intact
   4 #
   5 # You may distribute this module under the same terms as perl itself
   6 # POD documentation - main docs before the code
   7
   8 =head1 NAME
   9
  10 Bio::Network::IO::psi::intact - module to handle variations
  11 in PSI MI format from the IntAct database
  12
  13 =head1 SYNOPSIS
  14
  15 Do not use this module directly, use Bio::Network::IO. For example:
  16
  17   my $io = Bio::Network::IO->new(-format => 'psi',
  18                                  -source => 'intact',
  19                                  -file   => 'data.xml');
  20
  21   my $network = $io->next_network;
  22
  23 =head1 DESCRIPTION
  24
  25 There are slight differences between PSI MI files offered by various public
  26 databases. The Bio::Network::IO::psi* modules have methods for handling
  27 these variations. To load a module like this use the optional "-source"
  28 argument when creating a new Bio::Network::IO object.
  29
  30 =head1 FEEDBACK
  31
  32 =head2 Mailing Lists
  33
  34 User feedback is an integral part of the evolution of this and other
  35 Bioperl modules. Send your comments and suggestions preferably to one
  36 of the Bioperl mailing lists. Your participation is much appreciated.
  37
  38   bioperl-l@bioperl.org                  - General discussion
  39   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
  40
  41 =head2 Support
  42
  43 Please direct usage questions or support issues to the mailing list:
  44
  45 L<bioperl-l@bioperl.org>
  46
  47 rather than to the module maintainer directly. Many experienced and
  48 reponsive experts will be able look at the problem and quickly
  49 address it. Please include a thorough description of the problem
  50 with code and data examples if at all possible.
  51
  52 =head2 Reporting Bugs
  53
  54 Report bugs to the Bioperl bug tracking system to help us keep track
  55 the bugs and their resolution.  Bug reports can be submitted via the
  56 web:
  57
  58   http://bugzilla.open-bio.org/
  59
  60 =head1 AUTHORS
  61
  62 Brian Osborne bosborne at alum.mit.edu
  63
  64 =cut
  65
  66 package Bio::Network::IO::psi::intact;
  67 use strict;
  68 use vars qw(@ISA $FAC @EXPORT);
  69 use Bio::Network::IO;
  70 use Bio::Annotation::DBLink;
  71 use Bio::Annotation::Collection;
  72
  73 @EXPORT = qw(&);
  74
  75 =head2
  76
  77  Name      :
  78  Purpose   :
  79  Arguments :
  80  Returns   :
  81  Usage     :
  82
  83 =cut
  84
  85 1;
  86
  87 __END__