* sync with trunk
[bioperl-live.git] / Bio / 
tree5219b5a349a59db00005af554ed7e62aa2578d34
drwxr-xr-x   ..
drwxr-xr-x - Align
-rw-r--r-- 14181 AlignIO.pm
drwxr-xr-x - AlignIO
-rw-r--r-- 22243 AnalysisI.pm
-rw-r--r-- 4616 AnalysisParserI.pm
-rw-r--r-- 6052 AnalysisResultI.pm
-rw-r--r-- 2565 AnnotatableI.pm
drwxr-xr-x - Annotation
-rw-r--r-- 6076 AnnotationCollectionI.pm
-rw-r--r-- 5101 AnnotationI.pm
drwxr-xr-x - Assembly
-rw-r--r-- 10447 Biblio.pm
drwxr-xr-x - Biblio
drwxr-xr-x - Cluster
-rw-r--r-- 3725 ClusterI.pm
-rw-r--r-- 7318 ClusterIO.pm
drwxr-xr-x - ClusterIO
drwxr-xr-x - CodonUsage
drwxr-xr-x - Coordinate
drwxr-xr-x - DB
-rw-r--r-- 2382 DBLinkContainerI.pm
drwxr-xr-x - Das
-rw-r--r-- 13338 DasI.pm
-rw-r--r-- 2632 DescribableI.pm
drwxr-xr-x - Event
drwxr-xr-x - Expression
drwxr-xr-x - Factory
-rw-r--r-- 6682 FeatureHolderI.pm
-rw-r--r-- 13304 FeatureIO.pm
drwxr-xr-x - FeatureIO
-rw-r--r-- 7051 HandlerBaseI.pm
-rw-r--r-- 2285 IdCollectionI.pm
-rw-r--r-- 4788 IdentifiableI.pm
drwxr-xr-x - Index
drwxr-xr-x - LiveSeq
-rw-r--r-- 18320 LocatableSeq.pm
drwxr-xr-x - Location
-rw-r--r-- 11846 LocationI.pm
drwxr-xr-x - Map
-rw-r--r-- 4817 MapIO.pm
drwxr-xr-x - MapIO
drwxr-xr-x - Matrix
drwxr-xr-x - MolEvol
drwxr-xr-x - Ontology
-rw-r--r-- 9077 OntologyIO.pm
drwxr-xr-x - OntologyIO
-rw-r--r-- 6656 ParameterBaseI.pm
-rw-r--r-- 16793 Perl.pm
drwxr-xr-x - Phenotype
-rw-r--r-- 44676 PhyloNetwork.pm
drwxr-xr-x - PhyloNetwork
drwxr-xr-x - PopGen
-rw-r--r-- 25753 PrimarySeq.pm
-rw-r--r-- 23688 PrimarySeqI.pm
-rwxr-xr-x 19461 PullParserI.pm
-rw-r--r-- 8256 Range.pm
-rw-r--r-- 18382 RangeI.pm
drwxr-xr-x - Restriction
drwxr-xr-x - Root
drwxr-xr-x - Search
-rw-r--r-- 5056 SearchDist.pm
-rw-r--r-- 15580 SearchIO.pm
drwxr-xr-x - SearchIO
-rw-r--r-- 36875 Seq.pm
drwxr-xr-x - Seq
-rw-r--r-- 3068 SeqAnalysisParserI.pm
drwxr-xr-x - SeqEvolution
drwxr-xr-x - SeqFeature
-rw-r--r-- 19622 SeqFeatureI.pm
-rw-r--r-- 6068 SeqI.pm
-rw-r--r-- 21664 SeqIO.pm
drwxr-xr-x - SeqIO
-rw-r--r-- 24399 SeqUtils.pm
-rw-r--r-- 86253 SimpleAlign.pm
-rw-r--r-- 7266 SimpleAnalysisI.pm
-rw-r--r-- 15677 Species.pm
drwxr-xr-x - Structure
drwxr-xr-x - Symbol
-rwxr-xr-x 22858 Taxon.pm
-rw-r--r-- 11389 Taxonomy.pm
drwxr-xr-x - Taxonomy
drwxr-xr-x - Tools
drwxr-xr-x - Tree
-rw-r--r-- 7920 TreeIO.pm
drwxr-xr-x - TreeIO
-rw-r--r-- 3030 UpdateableSeqI.pm
drwxr-xr-x - Variation
-rw-r--r-- 4709 WebAgent.pm