Merge branch 'bugfix-exonerate' of git://github.com/JeanFred/bioperl-live into topic...
[bioperl-live.git] / Bio / 
tree1c74dbf15bc90371b970bf6b09c566c4174ab198
drwxr-xr-x   ..
drwxr-xr-x - Align
-rw-r--r-- 15443 AlignIO.pm
drwxr-xr-x - AlignIO
-rw-r--r-- 22818 AnalysisI.pm
-rw-r--r-- 5062 AnalysisParserI.pm
-rw-r--r-- 6499 AnalysisResultI.pm
-rw-r--r-- 2849 AnnotatableI.pm
drwxr-xr-x - Annotation
-rw-r--r-- 6522 AnnotationCollectionI.pm
-rw-r--r-- 5547 AnnotationI.pm
drwxr-xr-x - Assembly
-rw-r--r-- 11093 Biblio.pm
drwxr-xr-x - Biblio
drwxr-xr-x - Cluster
-rw-r--r-- 4172 ClusterI.pm
-rw-r--r-- 7967 ClusterIO.pm
drwxr-xr-x - ClusterIO
drwxr-xr-x - CodonUsage
drwxr-xr-x - Coordinate
drwxr-xr-x - DB
-rw-r--r-- 2830 DBLinkContainerI.pm
drwxr-xr-x - Das
-rw-r--r-- 13784 DasI.pm
-rw-r--r-- 3003 DescribableI.pm
drwxr-xr-x - Draw
drwxr-xr-x - Event
drwxr-xr-x - Factory
-rw-r--r-- 7266 FeatureHolderI.pm
-rw-r--r-- 7500 HandlerBaseI.pm
-rw-r--r-- 2656 IdCollectionI.pm
-rw-r--r-- 5159 IdentifiableI.pm
drwxr-xr-x - Index
drwxr-xr-x - LiveSeq
-rw-r--r-- 21618 LocatableSeq.pm
drwxr-xr-x - Location
-rw-r--r-- 12316 LocationI.pm
drwxr-xr-x - Map
-rw-r--r-- 5460 MapIO.pm
drwxr-xr-x - MapIO
drwxr-xr-x - Matrix
drwxr-xr-x - MolEvol
drwxr-xr-x - Nexml
-rw-r--r-- 13374 NexmlIO.pm
drwxr-xr-x - Ontology
-rw-r--r-- 9731 OntologyIO.pm
drwxr-xr-x - OntologyIO
-rw-r--r-- 7108 ParameterBaseI.pm
-rw-r--r-- 18182 Perl.pm
drwxr-xr-x - Phenotype
-rw-r--r-- 44753 PhyloNetwork.pm
drwxr-xr-x - PhyloNetwork
drwxr-xr-x - PopGen
-rw-r--r-- 30082 PrimarySeq.pm
-rw-r--r-- 29766 PrimarySeqI.pm
-rw-r--r-- 19973 PullParserI.pm
-rw-r--r-- 8844 Range.pm
-rw-r--r-- 19872 RangeI.pm
drwxr-xr-x - Restriction
drwxr-xr-x - Root
drwxr-xr-x - Search
-rw-r--r-- 5507 SearchDist.pm
-rw-r--r-- 22388 SearchIO.pm
drwxr-xr-x - SearchIO
-rw-r--r-- 40685 Seq.pm
drwxr-xr-x - Seq
-rw-r--r-- 3514 SeqAnalysisParserI.pm
drwxr-xr-x - SeqEvolution
drwxr-xr-x - SeqFeature
-rw-r--r-- 21251 SeqFeatureI.pm
-rw-r--r-- 6545 SeqI.pm
-rw-r--r-- 24331 SeqIO.pm
drwxr-xr-x - SeqIO
-rw-r--r-- 56113 SeqUtils.pm
-rw-r--r-- 93113 SimpleAlign.pm
-rw-r--r-- 7719 SimpleAnalysisI.pm
-rw-r--r-- 19578 Species.pm
drwxr-xr-x - Structure
drwxr-xr-x - Symbol
-rw-r--r-- 23527 Taxon.pm
-rw-r--r-- 11835 Taxonomy.pm
drwxr-xr-x - Taxonomy
drwxr-xr-x - Tools
drwxr-xr-x - Tree
-rw-r--r-- 8398 TreeIO.pm
drwxr-xr-x - TreeIO
-rw-r--r-- 3476 UpdateableSeqI.pm
drwxr-xr-x - Variation
-rw-r--r-- 5155 WebAgent.pm