Merge remote branch 'upstream/master' into topic/tree_dbsqlite_memoryfix
[bioperl-live.git] / Bio / 
treed5a9d1caea8ce94f34d05ec575bb2faec17fda13
drwxr-xr-x   ..
drwxr-xr-x - Align
-rw-r--r-- 15162 AlignIO.pm
drwxr-xr-x - AlignIO
-rw-r--r-- 22801 AnalysisI.pm
-rw-r--r-- 5045 AnalysisParserI.pm
-rw-r--r-- 6481 AnalysisResultI.pm
-rw-r--r-- 2832 AnnotatableI.pm
drwxr-xr-x - Annotation
-rw-r--r-- 6505 AnnotationCollectionI.pm
-rw-r--r-- 5530 AnnotationI.pm
drwxr-xr-x - Assembly
-rw-r--r-- 10876 Biblio.pm
drwxr-xr-x - Biblio
drwxr-xr-x - Cluster
-rw-r--r-- 4154 ClusterI.pm
-rw-r--r-- 7747 ClusterIO.pm
drwxr-xr-x - ClusterIO
drwxr-xr-x - CodonUsage
drwxr-xr-x - Coordinate
drwxr-xr-x - DB
-rw-r--r-- 2811 DBLinkContainerI.pm
drwxr-xr-x - Das
-rw-r--r-- 13767 DasI.pm
-rw-r--r-- 2986 DescribableI.pm
drwxr-xr-x - Draw
drwxr-xr-x - Event
drwxr-xr-x - Factory
-rw-r--r-- 7190 FeatureHolderI.pm
-rw-r--r-- 13854 FeatureIO.pm
drwxr-xr-x - FeatureIO
-rw-r--r-- 7483 HandlerBaseI.pm
-rw-r--r-- 2639 IdCollectionI.pm
-rw-r--r-- 5142 IdentifiableI.pm
drwxr-xr-x - Index
drwxr-xr-x - LiveSeq
-rw-r--r-- 20874 LocatableSeq.pm
drwxr-xr-x - Location
-rw-r--r-- 12299 LocationI.pm
drwxr-xr-x - Map
-rw-r--r-- 5246 MapIO.pm
drwxr-xr-x - MapIO
drwxr-xr-x - Matrix
drwxr-xr-x - MolEvol
drwxr-xr-x - Nexml
-rw-r--r-- 13357 NexmlIO.pm
drwxr-xr-x - Ontology
-rw-r--r-- 9506 OntologyIO.pm
drwxr-xr-x - OntologyIO
-rw-r--r-- 7091 ParameterBaseI.pm
-rw-r--r-- 17223 Perl.pm
drwxr-xr-x - Phenotype
-rw-r--r-- 44744 PhyloNetwork.pm
drwxr-xr-x - PhyloNetwork
drwxr-xr-x - PopGen
-rw-r--r-- 26727 PrimarySeq.pm
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-rw-r--r-- 8805 Range.pm
-rw-r--r-- 19854 RangeI.pm
drwxr-xr-x - Restriction
drwxr-xr-x - Root
drwxr-xr-x - Search
-rw-r--r-- 5490 SearchDist.pm
-rw-r--r-- 16047 SearchIO.pm
drwxr-xr-x - SearchIO
-rw-r--r-- 39847 Seq.pm
drwxr-xr-x - Seq
-rw-r--r-- 3497 SeqAnalysisParserI.pm
drwxr-xr-x - SeqEvolution
drwxr-xr-x - SeqFeature
-rw-r--r-- 19613 SeqFeatureI.pm
-rw-r--r-- 6497 SeqI.pm
-rw-r--r-- 22334 SeqIO.pm
drwxr-xr-x - SeqIO
-rw-r--r-- 25076 SeqUtils.pm
-rw-r--r-- 91051 SimpleAlign.pm
-rw-r--r-- 7702 SimpleAnalysisI.pm
-rw-r--r-- 19561 Species.pm
drwxr-xr-x - Structure
drwxr-xr-x - Symbol
-rwxr-xr-x 23415 Taxon.pm
-rw-r--r-- 11818 Taxonomy.pm
drwxr-xr-x - Taxonomy
drwxr-xr-x - Tools
drwxr-xr-x - Tree
-rw-r--r-- 8173 TreeIO.pm
drwxr-xr-x - TreeIO
-rw-r--r-- 3459 UpdateableSeqI.pm
drwxr-xr-x - Variation
-rw-r--r-- 5138 WebAgent.pm