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Remove (merge didn't remove this for some reason)
2008-12-24
c
jfiel
d
s
Re
m
ove (merge did
n
't remove this
for some re
a
son)
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
Remove (merge
di
d
n't remove this for some reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trunk with branch
commit
|
commitdiff
|
tree
2008-12-20
c
jfie
l
ds
5
.
6
.
1
is min per
l
version required for all core m
o
dul
e
s now
commit
|
commitdiff
|
tree
2008-12-19
cjfields
update NAMES
commit
|
commitdiff
|
tree
2008-12-19
cjfi
e
lds
small typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typ
o
commit
|
commitdiff
|
tree
2008-12-18
c
j
fiel
d
s
[
b
ug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfiel
d
s
fix tes
t
n
umber
commit
|
commitdiff
|
tree
2008-12-17
cjfields
u
pdate Test::War
n
(fixes
Qual
.
t te
s
t problems w
i
th
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
missed on
e
commit
|
commitdiff
|
tree
2008-12-16
c
jfields
EUti
l
ities remote test
s
back online
(
s
imp
l
e
tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfi
e
l
d
s
EUt
i
l
i
ties r
e
m
o
te
tests ba
c
k
o
nli
n
e
(simple t
e
s
ts only)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
You mus
t
actua
l
ly test d
a
ta
i
f you want this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
Don't
u
se print! Changing to $self->
d
ebug or
c
ommentin
g
out
commit
|
commitdiff
|
tree
2008-12-16
cjf
i
elds
Bio::Graph deprecated
i
n 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
st
i
f
le
warnings when passing stri
n
g inste
a
d of integer
commit
|
commitdiff
|
tree
2008-12-16
cjfields
has
h
ref, not array
ref
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 2637
]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 26
3
7
]
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
[bug 2
6
37]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
i
e
lds
[bug 2712]
commit
|
commitdiff
|
tree
2008-12-15
cj
f
i
e
lds
score
s
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ields
r
emaining
t
ests for Bio::
T
ool::EUti
l
i
t
ies
commit
|
commitdiff
|
tree
2008-12-15
c
jfiel
d
s
more test data
commit
|
commitdiff
|
tree
2008-12-15
cjfields
Updat
e
s:
commit
|
commitdiff
|
tree
2008-12-13
c
j
fields
in
i
tial batch o
f
EUt
i
lParameters tests
commit
|
commitdiff
|
tree
2008-12-13
cjfiel
d
s
einf
o
tests
commit
|
commitdiff
|
tree
2008-12-12
cjfield
s
som
e
EUtilities tests (parsin
g
f
rom
f
i
le
s
)
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
el
d
s
some
t
est data
for
Bio::Tools::EUtilitie
s
commit
|
commitdiff
|
tree
2008-12-12
cj
f
ields
updates to EUtil
i
ties (gettin
g
re
a
dy
f
or docs, tests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
c
jf
i
elds
Move EU
t
ilPa
r
a
m
eters to
T
ools
(
seems m
o
re appropri
a
t
e
)
commit
|
commitdiff
|
tree
2008-12-11
cjfields
f
i
x
f
or bug w
h
en gett
i
ng c
a
ched respon
s
e wi
t
h filename
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfields
s
m
a
l
l pointer
to
w
iki pa
g
e (wi
l
l update a
l
ong with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfields
updates
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ield
s
return,
not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
return
,
not
'
return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[
b
u
g 2699
]
commit
|
commitdiff
|
tree
2008-12-11
c
j
fields
[bu
g
2
699
]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2707
]
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
eld
s
Removing fro
m
HEAD (d
e
precated for 1
.
6
)
commit
|
commitdiff
|
tree
2008-12-10
cjfiel
d
s
mini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfields
update deprecation list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
re
m
ove Bio::Graphic
s
(se
p
arate
p
ackag
e
now)
commit
|
commitdiff
|
tree
2008-12-10
cjfi
e
lds
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
ds
Remove depende
n
ci
e
s for Bio::Gr
a
phics an
d
deprecate
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
c
j
f
ields
diag() only
on verbose
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
Fix last loop tests, move some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to test new
t
emp classes and ensu
r
e
t
hat added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update
Mauricio
'
s
email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Upd
a
te R
o
y's e
m
ail
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
lds
Roy'
s
email
(
and bioperl
.
org n
o
t bio
p
erl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
c
jf
i
e
l
ds
Updated e
m
ails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[
b
ug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Ne
e
d to retrieve the tree
f
or o
u
tpu
t
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-04
cjf
i
elds
Make
T
a
rget a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjf
i
elds
D
ir
e
ctory is no longer
needed (Heikk
i
split
t
h
i
s up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ields
add fo
r
ce_ns
e
tests
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
leav
e
ID undefin
e
d
i
f
i
t
isn't pre
s
ent, but allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
emov
e
f
iles acciden
t
ly a
d
ded from
last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tools
t
ests
(
n
e
eds some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove (tes
t
s
a
re r
e
dunda
n
t,
i
n
C
ons
e
d
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
M
e
rge te
s
ts and remove red
u
n
d
ant file
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
U
p
d
ate
t
est count
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Merge tests
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Remove redundant f
i
le
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Rem
o
v
e old files
commit
|
commitdiff
|
tree
2008-12-03
c
j
field
s
Start Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfields
smal
l
up
d
ates:
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
forg
o
t to increment test
count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Add a couple
of tests for seq_id (small b
u
t
s
ignifi
c
ant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
[bu
g
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug
2
450
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
some pod updates
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
e
l
d
s
[bug
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
elds
f
ix erroneously
rename
d
stockholm t
e
sts
commit
|
commitdiff
|
tree
2008-12-02
cjfields
small pod
fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
sil
e
nce GuessSeqFormat
.
t
w
arnings (not sure if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rea
r
ra
n
g
e
to avoid unn
e
cessary war
n
in
g
s
commit
|
commitdiff
|
tree
2008-11-28
cjfields
Add warning for missing data (real bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash ref,
not a
hash
commit
|
commitdiff
|
tree
2008-11-28
c
jfi
e
l
ds
test file
name and
test #
c
orrection
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
correct te
s
t file name
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
'
:
:', n
o
t ':'
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
rename (rec
u
r
sive tests
think
t
his
i
s a test file)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
r
e
cur
s
e into test subdirec
t
ories (means a
n
y non-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
i
e
lds
rem
o
ve
redundan
t
c
o
p
y
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
el
d
s
move into director
y
stru
c
ture
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
m
ove into directory
structure (DaveM++)
commit
|
commitdiff
|
tree
2008-11-26
c
j
fields
[
bug 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
Redundant; file was renamed S
e
archIO_
b
l
ast_pull
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
c
j
f
i
e
lds
[bu
g
2686]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
fi
x
subversi
o
n tags
commit
|
commitdiff
|
tree
next