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[bug 2699]
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfie
l
ds
[bug
269
9
]
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[bug 2707]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
R
e
movi
n
g
f
r
om HEAD
(depre
c
ated
for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
d
s
m
ini pod fix
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
update de
p
recatio
n
list
commit
|
commitdiff
|
tree
2008-12-10
cjfields
remove Bio:
:
Graphics (separate package now)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
[
b
ug 2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
Remov
e
depende
n
c
ie
s
for Bi
o
::Graphics a
n
d deprecated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
d
s
Squa
s
h warning
commit
|
commitdiff
|
tree
2008-12-09
cjfie
l
ds
diag(
)
only on ver
b
ose
commit
|
commitdiff
|
tree
2008-12-09
cj
f
i
elds
F
i
x la
s
t lo
o
p t
e
sts, move some
to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify t
o
test new temp classes and ensure
t
ha
t
a
d
ded
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
update Mau
r
icio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update Roy
'
s email
commit
|
commitdiff
|
tree
2008-12-08
c
jfie
l
d
s
Roy's email (and biop
e
rl
.
org not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
elds
Updated ema
i
ls
commit
|
commitdiff
|
tree
2008-12-07
cjf
i
elds
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need
to retrieve th
e
tr
e
e for output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug
2
45
0
]
commit
|
commitdiff
|
tree
2008-12-04
cj
f
ields
M
ake Target a tru
e
DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfields
D
i
r
e
ctory is no longer ne
e
ded (
H
eikki
s
pl
i
t
this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
a
dd force_nse test
s
commit
|
commitdiff
|
tree
2008-12-03
cjfields
leave
I
D undef
i
n
e
d
i
f it isn't presen
t
, but allo
w
th
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove
f
iles accidently adde
d
from las
t
commit
commit
|
commitdiff
|
tree
2008-12-03
c
jfie
l
ds
R
e
organize Tools tests
(nee
d
s
some m
o
re splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
e
m
o
ve (tes
t
s are
r
edundant,
in Consed
.
t
)
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
M
erge tests an
d
remo
v
e re
d
undant file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Update
t
est count
commit
|
commitdiff
|
tree
2008-12-03
c
jf
i
elds
Merg
e
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remov
e
redund
a
nt file
commit
|
commitdiff
|
tree
2008-12-03
c
j
fi
e
lds
R
e
mo
v
e old f
i
les
commit
|
commitdiff
|
tree
2008-12-03
cjfields
S
t
art
T
ools mo
v
e
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
small updates:
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
forgot to increment test count
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Add a couple
o
f tests f
o
r s
e
q
_
id
(s
m
all bu
t
signif
i
cant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cj
f
i
eld
s
[b
u
g 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bu
g
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
[bug
2450
]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
some pod up
d
a
t
e
s
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
fix erro
n
eou
s
ly renamed stock
h
ol
m
tests
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
sma
l
l pod fix
commit
|
commitdiff
|
tree
2008-11-30
c
jfie
l
ds
silence GuessSeqFormat
.
t warnings (not sure if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
rearrang
e
to avoid unnec
e
ss
a
ry warnin
g
s
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
Add warning f
o
r missi
n
g data (real
bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash ref, not a has
h
commit
|
commitdiff
|
tree
2008-11-28
cjfields
test file n
a
me and tes
t
#
c
orre
c
tion
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
e
l
ds
c
orrect
test file name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
':
:
', not ':'
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rename (recu
r
sive tests think th
i
s
i
s a
t
est file)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rec
u
r
s
e
into test su
b
di
r
ectories (me
a
ns any non-
t
e
s
t
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
remove redundant copy
commit
|
commitdiff
|
tree
2008-11-28
cjfields
move into directory structur
e
commit
|
commitdiff
|
tree
2008-11-28
cjfield
s
move int
o
dire
c
tory st
r
uctu
r
e
(D
a
veM+
+
)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[b
u
g 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfi
e
l
d
s
Redundant;
file w
a
s r
e
named S
e
archIO_blast_pull
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfi
e
lds
[bug 2686
]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
fix
s
u
bversion tags
commit
|
commitdiff
|
tree
2008-11-25
cjfields
po, not
p
oa
commit
|
commitdiff
|
tree
2008-11-25
cjfields
f
ix undefined value warnings
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2686
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2641, 2
6
42]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
s
p
l
i
t
up AlignIO tests
commit
|
commitdiff
|
tree
2008-11-25
c
jfields
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
[bug 26
3
0]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bu
g
2633]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[
b
ug 2663]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2262
]
commit
|
commitdiff
|
tree
2008-11-24
cjfi
e
lds
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-18
cj
f
ields
*
Dou
b
le-checked d
a
ta, tested results were wrong
commit
|
commitdiff
|
tree
2008-11-18
cj
f
ields
* seq_inds is no
t
d
e
fi
n
ed fo
r
Mo
d
el-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
c
j
fiel
d
s
*
f
i
x
POD
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'high
l
y' (and I get r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cj
f
ield
s
R
em
o
ve red
u
ndant
test files
commit
|
commitdiff
|
tree
2008-11-17
cjfi
e
lds
[tests]
commit
|
commitdiff
|
tree
2008-11-17
cjfields
m
ove resul
t
s2hash test
utility sub to
S
e
a
r
ch
U
tils
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[b
u
g
2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
perltidy
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[bug 2635]
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[
b
ug 2656]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
re
m
ove debugg
i
n
g lines
commit
|
commitdiff
|
tree
2008-11-11
cjfi
e
lds
remove fi
x
ed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
cjfields
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clarify res
u
lt_count (d
i
s
c
u
ssions on
m
a
il li
s
t
per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cj
f
i
elds
[bug 2632]
commit
|
commitdiff
|
tree
2008-11-10
cjfield
s
[bug 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wrap text
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* parse 'Feature
s
i
n
t
his par
t
of subject sequen
c
e
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* parse 'Features in
th
i
s
part o
f
sub
j
e
ct sequence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bug
2632]
commit
|
commitdiff
|
tree
2008-10-29
c
jfiel
d
s
fix
s
eq_inds(); was
n
't callin
g
identical re
s
idues for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfields
[bu
g
2
6
33]
commit
|
commitdiff
|
tree
2008-10-28
c
j
fie
l
ds
[bug 2
6
3
0
]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
Fix unlin
k
() war
n
ing
commit
|
commitdiff
|
tree
2008-10-26
cjfields
end =
star
t
if only sta
r
t is pass
e
d
commit
|
commitdiff
|
tree
2008-10-26
c
j
fi
e
lds
use
v
alid_Location to c
h
eck Location
sta
t
e
commit
|
commitdiff
|
tree
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