[bug 2630]
commit40de2a08caa286a88c0d2c22f2f2863344f37798
authorcjfields <cjfields@bioperl.org>
Tue, 28 Oct 2008 16:08:52 +0000 (28 16:08 -0000)
committercjfields <cjfields@bioperl.org>
Tue, 28 Oct 2008 16:08:52 +0000 (28 16:08 -0000)
tree72abe017a907f079b4c99d42643d2ea17790371d
parent181a18ec946eb58b67d35e5e0c42da2609f58630
[bug 2630]
* initial Bio::LocatableSeq::mapping implementation (two element array, maps # symbols to # positions)
* fixes GenericHSP warnings, but FastaHSP-generated LocatableSeqs are still problematic
* removed redundant code from LargeLocatableSeq and fix some inheritance tree problems

svn path=/bioperl-live/trunk/; revision=14971
Bio/LocatableSeq.pm
Bio/Search/HSP/FastaHSP.pm
Bio/Search/HSP/GenericHSP.pm
Bio/Seq/LargeLocatableSeq.pm
t/AlignIO.t
t/SearchIO.t