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[bug 2699]
2008-12-11
cjfields
[bug
2
699]
commit
|
commitdiff
|
tree
2008-12-11
cj
f
ields
[bug
2699]
commit
|
commitdiff
|
tree
2008-12-11
c
jfi
e
lds
[bug 2
7
0
7]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
R
e
moving from HEAD (
d
eprecated for
1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
m
ini p
o
d fix
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
u
p
date depreca
t
ion list
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
remove
B
i
o::Grap
h
i
c
s (separate package now
)
commit
|
commitdiff
|
tree
2008-12-10
cjfield
s
[bu
g
2637]
commit
|
commitdiff
|
tree
2008-12-10
cjfields
R
emove depend
e
n
c
i
es for Bio::Graphics and deprecate
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
c
j
fie
l
ds
S
q
uash
w
arning
commit
|
commitdiff
|
tree
2008-12-09
cj
f
ields
diag() only on ve
r
bose
commit
|
commitdiff
|
tree
2008-12-09
cjfi
e
l
d
s
Fix
l
ast
l
o
op tests, move some to c
a
n_ok
commit
|
commitdiff
|
tree
2008-12-09
c
jfields
M
odify to
t
est new
t
e
m
p classes
a
n
d
ensure that
a
dded
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
u
pdate Mauricio's
e
ma
i
l
commit
|
commitdiff
|
tree
2008-12-08
cj
f
iel
d
s
Upd
a
te Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
jfields
R
oy
'
s em
a
il (and
b
ioperl
.
o
rg
n
o
t
biop
e
rl
.
ed
u
)
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
l
d
s
Updated emails
commit
|
commitdiff
|
tree
2008-12-07
c
jfiel
d
s
[bu
g
2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
cj
f
ield
s
Need t
o
retrie
v
e the tre
e
for out
p
ut
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Target
a true DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfiel
d
s
Directo
r
y is no longer n
e
e
d
ed
(
Heikki s
p
l
i
t this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ields
add
f
o
rce_nse
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
l
e
ave ID und
e
fined
i
f
it isn't p
r
es
e
nt, but all
o
w
the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Remov
e
files accidently added from last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Re
o
rg
a
nize Tools
tests (needs some more s
p
litt
i
ng)
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Remove
(
tests
a
re
r
e
dundant, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tests and remove redund
a
n
t
file
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
Upd
a
te test count
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Me
r
ge tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
emove redundant fi
l
e
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
Remov
e
old files
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ie
l
d
s
Sta
r
t Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
l
ds
sm
a
ll updat
e
s:
commit
|
commitdiff
|
tree
2008-12-03
cjfields
forgot to incr
e
ment tes
t
coun
t
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Add a co
u
p
l
e of tests
for seq_id (small
bu
t
s
i
gnificant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
d
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ie
l
ds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
s
om
e
pod up
d
ates
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
i
elds
[
b
ug
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
fix er
r
oneously renamed stockholm
tests
commit
|
commitdiff
|
tree
2008-12-02
c
jfie
l
ds
small pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
silenc
e
GuessS
e
qFo
r
mat
.
t warnings
(
not sure i
f
old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
r
earran
g
e t
o
avo
i
d unnecessary warnings
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
ields
Add
w
a
r
n
i
ng for missin
g
d
ata (
r
e
al bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfield
s
h
a
s
h
ref, n
o
t a hash
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
test file name and test # correction
commit
|
commitdiff
|
tree
2008-11-28
cjfields
cor
r
ect t
e
st file name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
'
:
:'
,
not ':'
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
e
lds
rena
m
e
(
rec
u
rsive t
e
sts think this is
a
te
s
t file)
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
ield
s
recurse into
test subdirect
o
r
ies (m
e
an
s
any non-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
remove
redundant copy
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
eld
s
m
ove into
directory structure
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
move
i
nt
o
d
i
r
ectory structure (DaveM++)
commit
|
commitdiff
|
tree
2008-11-26
cjfi
e
l
ds
[bug 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
Redundant; file was ren
a
med S
e
archIO_b
l
ast_pu
l
l
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[
b
ug 2
6
86
]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
fix subversion tags
commit
|
commitdiff
|
tree
2008-11-25
c
jfields
po, not poa
commit
|
commitdiff
|
tree
2008-11-25
cjfields
fi
x
u
n
defined val
u
e
w
arni
n
gs
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug
2
6
86]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 264
1
, 2642]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
s
p
lit up
A
lignIO tests
commit
|
commitdiff
|
tree
2008-11-25
c
j
fields
[bug
2
682]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug
2
6
30
]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
elds
[bug
2633]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug
2
663]
commit
|
commitdiff
|
tree
2008-11-24
cjfiel
d
s
[
b
u
g
2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2262]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2630
]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
*
Double-checked
d
ata, tes
t
ed
r
e
sult
s
were wrong
commit
|
commitdiff
|
tree
2008-11-18
cjfiel
d
s
* seq_inds
i
s no
t
defined
f
or Model-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
cj
f
ields
*
fix PO
D
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'high
l
y' (an
d
I get r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
Rem
o
v
e
redundant te
s
t files
commit
|
commitdiff
|
tree
2008-11-17
cjfield
s
[
t
ests]
commit
|
commitdiff
|
tree
2008-11-17
cjfields
mo
v
e r
e
sults2hash
test utility sub to SearchUtil
s
commit
|
commitdiff
|
tree
2008-11-16
c
jfi
e
lds
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfi
e
lds
per
l
tidy
commit
|
commitdiff
|
tree
2008-11-16
cjfield
s
[bu
g
2635]
commit
|
commitdiff
|
tree
2008-11-14
cj
f
i
e
ld
s
[b
u
g
2
656]
commit
|
commitdiff
|
tree
2008-11-11
c
j
field
s
remove debugging l
i
nes
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
remove fixed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
c
jfie
l
ds
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clarify r
e
sult_cou
n
t (
d
iscussions
on mail li
s
t per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cjfie
l
ds
[bug 2632]
commit
|
commitdiff
|
tree
2008-11-10
c
jfield
s
[
b
u
g 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wr
a
p tex
t
commit
|
commitdiff
|
tree
2008-11-04
cjf
i
elds
* parse 'Features in this par
t
of
subject sequence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfields
*
parse
'Featur
e
s
i
n this part of subject sequenc
e
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bu
g
2632]
commit
|
commitdiff
|
tree
2008-10-29
cjfields
fix seq_inds(
)
;
w
asn
'
t calling id
e
ntical
residues
f
or
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfields
[bug
2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfie
l
ds
[bug 2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
Fix unlin
k
() w
a
rn
i
ng
commit
|
commitdiff
|
tree
2008-10-26
cjfields
end = start if only start is passed
commit
|
commitdiff
|
tree
2008-10-26
c
jfields
use val
i
d_L
o
cation
t
o check Lo
c
a
t
ion s
t
at
e
commit
|
commitdiff
|
tree
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