repo.or.cz
/
bioperl-live.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
remove Bio::Graphics (separate package now)
2008-12-10
cjfields
remove Bio::Gr
a
phics
(sepa
r
ate pack
a
ge now)
commit
|
commitdiff
|
tree
2008-12-10
cjfie
l
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-10
c
j
fields
Remove depe
n
dencie
s
for Bio::Graph
i
cs and depreca
t
ed
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfiel
d
s
Squas
h
w
a
rning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
d
i
ag() only on verbose
commit
|
commitdiff
|
tree
2008-12-09
c
j
fields
Fi
x
last loop tests, mo
v
e
s
o
me to c
a
n_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify to
t
est new temp
c
l
asse
s
and
ensure t
h
at add
e
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update
Mauricio's
email
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
elds
Update R
o
y
'
s
email
commit
|
commitdiff
|
tree
2008-12-08
c
j
fi
e
lds
Roy's email
(and b
i
o
p
erl
.
o
r
g not bi
o
per
l
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated em
a
ils
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfiel
d
s
Need to retrieve the
t
ree fo
r
output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[
b
ug 245
0
]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Tar
g
et
a
true
DBLink
commit
|
commitdiff
|
tree
2008-12-04
c
jfields
Dir
e
ct
o
ry is no longer
needed (Heikki split this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfiel
d
s
add for
c
e_nse tests
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
leave ID und
e
fined if
it isn't
pr
e
sent,
b
ut allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
ield
s
Re
m
ove files accidentl
y
ad
d
ed
f
rom last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorganize Tools tests (need
s
some more splitt
i
ng
)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Re
m
ove
(
t
e
sts are re
d
unda
n
t
,
i
n Cons
e
d
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Merge t
e
s
ts and remove redundant
file
commit
|
commitdiff
|
tree
2008-12-03
c
jfiel
d
s
Upda
t
e te
s
t
count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove redundant fi
l
e
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remov
e
old file
s
commit
|
commitdiff
|
tree
2008-12-03
c
j
f
i
eld
s
Start Tool
s
move
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
s
m
all u
p
dates:
commit
|
commitdiff
|
tree
2008-12-03
cjfields
forgot to
i
n
crement test co
u
nt
commit
|
commitdiff
|
tree
2008-12-03
c
j
fi
e
lds
Add a
c
ouple of tests for
seq
_
id (small
b
ut s
i
gnificant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[bug
2
4
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
elds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[
bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
s
o
me pod updates
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[
bug 2450
]
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
elds
fix erroneous
l
y
r
e
n
amed stockholm tests
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
sm
a
ll pod fix
commit
|
commitdiff
|
tree
2008-11-30
c
j
fields
silence Gu
e
ssSeqF
o
rmat
.
t wa
r
nings (not sure if o
l
d
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rear
r
ange to avoid unnecessary warnings
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
Add warning
f
or missi
n
g data (
r
e
a
l
b
ug)
commit
|
commitdiff
|
tree
2008-11-28
cjfie
l
ds
hash ref, not
a has
h
commit
|
commitdiff
|
tree
2008-11-28
cjfields
test
fi
l
e nam
e
and test # co
r
rectio
n
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
c
o
r
rec
t
test file name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
'::', not '
:
'
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
rename (
r
ecursive tests think
t
his is
a test
f
ile)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
r
e
c
urse
i
nt
o
te
s
t
subdirectories (means any no
n
-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
j
fie
l
d
s
re
m
ove
r
edundan
t
copy
commit
|
commitdiff
|
tree
2008-11-28
cjfields
m
ov
e
i
n
to directory s
t
ructure
commit
|
commitdiff
|
tree
2008-11-28
cjfields
m
o
ve
i
n
to directory st
r
uct
u
re (DaveM++
)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[b
u
g
2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
R
ed
u
nda
n
t; file w
a
s ren
a
med Se
a
rchIO_blast_p
u
ll
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
elds
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-26
c
jfields
fix
s
ubversion tags
commit
|
commitdiff
|
tree
2008-11-25
c
j
fields
po, not
p
o
a
commit
|
commitdiff
|
tree
2008-11-25
cjfie
l
d
s
fix
undefined value warnin
g
s
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
lds
[bug 268
6
]
commit
|
commitdiff
|
tree
2008-11-25
cj
f
i
eld
s
[b
u
g 2641
,
2642]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
sp
l
it
up AlignIO tests
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
[bug 263
0
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2
6
33]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
elds
[
bug
2663]
commit
|
commitdiff
|
tree
2008-11-24
c
j
fields
[bug 26
6
3]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[b
u
g
226
2
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[b
u
g 2630]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
*
Double-checked dat
a
, te
s
ted re
s
ults w
e
re wrong
commit
|
commitdiff
|
tree
2008-11-18
c
jfields
* seq_
i
n
d
s is not defi
n
ed f
o
r
M
o
del-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
c
j
fi
e
lds
*
fix POD
commit
|
commitdiff
|
tree
2008-11-17
cjfields
* '
h
ig
h
l
y' (and
I
g
et r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfiel
d
s
Remove redu
n
dan
t
test files
commit
|
commitdiff
|
tree
2008-11-17
cjfi
e
lds
[t
e
sts]
commit
|
commitdiff
|
tree
2008-11-17
c
jfie
l
ds
move results
2
h
ash test utility sub to
Se
a
rc
h
Utils
commit
|
commitdiff
|
tree
2008-11-16
cjf
i
elds
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
p
e
rltidy
commit
|
commitdiff
|
tree
2008-11-16
cjfi
e
lds
[b
u
g
2
635]
commit
|
commitdiff
|
tree
2008-11-14
cj
f
ields
[bug 265
6
]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
remove debugging lines
commit
|
commitdiff
|
tree
2008-11-11
cj
f
ields
r
e
move fixed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
cj
f
ie
l
ds
[
b
ug 26
5
0]
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
Cl
a
ri
f
y result_count (discussions on mai
l
list per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
[
b
ug 2632
]
commit
|
commitdiff
|
tree
2008-11-10
cj
f
ields
[bug 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
w
rap t
e
xt
commit
|
commitdiff
|
tree
2008-11-04
c
j
f
ields
*
parse 'Features in this part of subject sequence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cj
f
i
e
lds
* parse 'Fea
t
ures in thi
s
part of subject sequ
e
nce
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
c
j
fields
[bug
2
632]
commit
|
commitdiff
|
tree
2008-10-29
cjf
i
elds
fix seq_inds()
;
wasn't calling identical residues for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfiel
d
s
[bug 2633]
commit
|
commitdiff
|
tree
2008-10-28
c
j
fiel
d
s
[
b
ug 2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfield
s
Fix un
l
ink() warning
commit
|
commitdiff
|
tree
2008-10-26
c
j
fields
end
=
start if only s
t
art is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfi
e
lds
u
s
e valid_Loca
t
ion to check Location stat
e
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
ds
add d
o
cs f
o
r Locatio
n
I method v
a
lid_Location
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-26
c
jfields
[bug 26
2
1]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 262
4
]
commit
|
commitdiff
|
tree
2008-10-26
cjf
i
elds
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-25
cjfield
s
b
ullet-pr
o
of prototyp
e
test
commit
|
commitdiff
|
tree
next