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add force_nse tests
2008-12-03
cjfields
add f
o
r
c
e
_nse
tests
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
l
eave ID u
n
defined if it i
s
n
't
p
resent,
but allow
t
he
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfield
s
Remove files accidently added from last
commit
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Reorgan
i
z
e Tools tests (
n
eeds some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Re
m
ove (te
s
ts are redundant, in Co
n
sed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Mer
g
e t
e
sts and remove redun
d
ant file
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
Upd
a
te test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tests
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Remove r
e
dundant f
i
le
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Remove
o
ld files
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Start Tools mov
e
commit
|
commitdiff
|
tree
2008-12-03
cjfields
sm
a
ll upda
t
es
:
commit
|
commitdiff
|
tree
2008-12-03
cjfields
forgot
to
i
n
crement
test count
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
d
s
Add a couple of
t
ests for seq_i
d
(small but sig
n
ificant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
[
b
ug
2
450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
[bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-02
c
jf
i
eld
s
[bug
2
450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
some pod updates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
fix er
r
oneous
l
y
r
e
n
amed stockh
o
l
m tests
commit
|
commitdiff
|
tree
2008-12-02
cjfields
small pod fi
x
commit
|
commitdiff
|
tree
2008-11-30
c
jf
i
e
l
d
s
sil
e
nce GuessSeqFormat
.
t warnings (n
o
t su
r
e
i
f old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rearra
n
ge t
o
avoid un
n
ecessary warnings
commit
|
commitdiff
|
tree
2008-11-28
cjfields
A
d
d
wa
r
ning for
m
issing data (real bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
hash ref
,
no
t
a
hash
commit
|
commitdiff
|
tree
2008-11-28
cjfields
test
f
ile
n
ame an
d
test #
correctio
n
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
correct tes
t
file name
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
'::
'
, n
o
t
':
'
commit
|
commitdiff
|
tree
2008-11-28
cjfields
renam
e
(rec
u
r
sive tests think this is a te
s
t file
)
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
rec
u
rse into test subdirectories (means any non-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
remove
r
edundant copy
commit
|
commitdiff
|
tree
2008-11-28
cjfields
m
ove int
o
directory structure
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
m
o
v
e i
n
to directory structure (DaveM++)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 25
6
7]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
R
e
dundant;
f
ile was ren
a
me
d
Se
a
r
c
hI
O
_blast_pu
l
l
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
elds
[bug
2
686]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
f
ix subversion tags
commit
|
commitdiff
|
tree
2008-11-25
cjfields
p
o, not poa
commit
|
commitdiff
|
tree
2008-11-25
cjfields
fix undefin
e
d value warnings
commit
|
commitdiff
|
tree
2008-11-25
cjf
i
elds
[bug
2
686]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 264
1
, 26
4
2
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
spl
i
t up AlignIO tes
t
s
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
lds
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfield
s
[bug 263
0
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[
b
ug 2633]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
e
l
d
s
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663
]
commit
|
commitdiff
|
tree
2008-11-24
c
jfield
s
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2262]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bu
g
2630]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* D
o
uble-c
h
e
ck
e
d dat
a
,
te
s
ted resu
l
ts
we
r
e wrong
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* seq_inds is not define
d
for Model-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* fix
P
OD
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'hi
g
hly
'
(and
I get r1
5
000!)
commit
|
commitdiff
|
tree
2008-11-17
cj
f
i
e
lds
Remove redundant tes
t
files
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[tests]
commit
|
commitdiff
|
tree
2008-11-17
cjf
i
elds
mov
e
results
2
hash test utility
s
ub to Search
U
t
i
l
s
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[
bug 2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
p
erltidy
commit
|
commitdiff
|
tree
2008-11-16
cj
f
ields
[bug 26
3
5
]
commit
|
commitdiff
|
tree
2008-11-14
cjfi
e
l
d
s
[bug 2656]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
r
em
o
ve debugging li
n
e
s
commit
|
commitdiff
|
tree
2008-11-11
c
jfields
remove fixed
verbo
s
e
flag
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfiel
d
s
Clarify r
e
sult_count (disc
u
ssions o
n
mail
l
is
t
per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cj
f
i
e
lds
[
bug 2632]
commit
|
commitdiff
|
tree
2008-11-10
cjf
i
eld
s
[bug 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
w
r
ap text
commit
|
commitdiff
|
tree
2008-11-04
cjfield
s
* parse 'Featur
e
s in this part of
s
ubj
e
ct sequence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cj
f
ields
* parse 'Features
i
n this
p
art
o
f
s
ubject
seq
u
ence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[
b
u
g
2632]
commit
|
commitdiff
|
tree
2008-10-29
c
jfields
fix
s
eq
_
inds(); wasn'
t
calling ide
n
tical residues for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfields
[
bug
2
6
3
3]
commit
|
commitdiff
|
tree
2008-10-28
cjf
i
elds
[bug
2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfield
s
Fix unli
n
k() w
a
rning
commit
|
commitdiff
|
tree
2008-10-26
cj
f
ields
e
n
d
= start if
o
nly star
t
is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use valid_Lo
c
atio
n
to chec
k
Loca
t
ion sta
t
e
commit
|
commitdiff
|
tree
2008-10-26
cj
f
ields
a
dd docs f
o
r Locat
i
o
n
I metho
d
valid_Location
commit
|
commitdiff
|
tree
2008-10-26
cj
f
ie
l
ds
[bug
2
621]
commit
|
commitdiff
|
tree
2008-10-26
c
jfields
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
ds
[bug 2624]
commit
|
commitdiff
|
tree
2008-10-26
cj
f
ields
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-25
cjfields
b
u
llet-proo
f
pro
t
o
type te
s
t
commit
|
commitdiff
|
tree
2008-10-22
cjfields
fix fil
e
properties
commit
|
commitdiff
|
tree
2008-10-22
cjfields
new mod
u
le fo
r
pars
i
ng
vec
s
creen -f 3
o
utput, courtesy
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
cjfields
add -source for AR
P
commit
|
commitdiff
|
tree
2008-10-15
c
j
fields
[bug
25
6
3]
commit
|
commitdiff
|
tree
2008-10-10
c
j
fiel
d
s
t
ypo
commit
|
commitdiff
|
tree
2008-10-10
cjfields
[bug 2519
]
commit
|
commitdiff
|
tree
2008-10-10
cjfield
s
[b
u
g 2519]
commit
|
commitdiff
|
tree
2008-10-07
cjfields
a
d
d
svn ta
g
commit
|
commitdiff
|
tree
2008-10-07
cjfields
TODO's work
commit
|
commitdiff
|
tree
2008-10-07
cjfields
[bu
g
2
612]
commit
|
commitdiff
|
tree
2008-10-07
cjfields
[
bug 2612]
commit
|
commitdiff
|
tree
2008-10-02
cjfiel
d
s
clean up XMFA pars
i
ng,
a
ll
o
w
space
s
in parsing (e
n
d
e
.
.
.
commit
|
commitdiff
|
tree
2008-09-27
cjfields
[BUG] bug 2598
commit
|
commitdiff
|
tree
2008-09-26
cjfields
[BUG] bugfi
x
f
or # 2598 (add
'
J')
commit
|
commitdiff
|
tree
2008-09-26
cjfields
[
B
UG] bug
2
5
93
commit
|
commitdiff
|
tree
2008-09-26
cjf
i
elds
[BUG] fix bug
2595
commit
|
commitdiff
|
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