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add force_nse tests
2008-12-03
cjfields
ad
d
force_n
s
e
t
ests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
leave ID un
d
e
fined if it isn't present, but allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Remove files accidently added from
last commit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
eorganize Tools t
e
sts (need
s
some mor
e
s
p
l
i
tting)
commit
|
commitdiff
|
tree
2008-12-03
cj
f
i
e
lds
Remove (tests are r
e
d
u
n
dan
t
, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
M
e
r
g
e tests and
remove red
u
ndant file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Updat
e
te
s
t
count
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Merge tests
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Remove redundan
t
file
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Remove old files
commit
|
commitdiff
|
tree
2008-12-03
cjfields
S
tart Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfields
small upd
a
tes
:
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
f
o
r
g
o
t to incre
m
ent te
s
t count
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Add a co
u
p
le
o
f test
s
f
or se
q
_id (sm
a
ll
b
ut signific
a
nt
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
[bug
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfi
e
lds
[b
u
g 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
some p
o
d
u
pdates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
fix erro
n
eously ren
a
med stock
h
o
lm test
s
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ield
s
small pod fix
commit
|
commitdiff
|
tree
2008-11-30
c
jf
i
elds
s
ilen
c
e Gue
s
sSeqF
o
rmat
.
t warnings (not sure
i
f old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
rearrange
to
avoid unnecessary warnings
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
e
lds
A
dd
w
arnin
g
f
or missing
d
at
a
(rea
l
b
u
g
)
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
hash ref, not a
hash
commit
|
commitdiff
|
tree
2008-11-28
c
j
field
s
t
e
s
t f
i
le
n
a
me an
d
test # correction
commit
|
commitdiff
|
tree
2008-11-28
cjfields
correct
t
est file name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
'::', not ':'
commit
|
commitdiff
|
tree
2008-11-28
cjfield
s
ren
a
me (re
c
ursive tes
t
s t
h
ink th
i
s
is a test file)
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ie
l
ds
recurse into t
e
st
s
u
bdirectories (means
an
y
non-
t
est
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
remove redu
n
d
a
n
t co
p
y
commit
|
commitdiff
|
tree
2008-11-28
cjfields
move i
n
t
o directory s
t
r
u
cture
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
move
i
nto direc
t
ory stru
c
ture
(
DaveM++
)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 25
6
7]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
Redundant; file wa
s
rena
m
ed
Sear
c
hIO_bla
s
t_pul
l
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-26
c
jfields
fi
x
subversion
t
a
gs
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
po, not poa
commit
|
commitdiff
|
tree
2008-11-25
c
j
fields
f
ix undefi
n
ed
value warning
s
commit
|
commitdiff
|
tree
2008-11-25
cjf
i
e
l
d
s
[
bug 2686]
commit
|
commitdiff
|
tree
2008-11-25
c
j
fie
l
ds
[bug 2641, 2642]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
spli
t
up Align
I
O
t
ests
commit
|
commitdiff
|
tree
2008-11-25
cjf
i
elds
[
b
ug 2
6
82]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
e
ld
s
[bug 263
3
]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
elds
[bug
2
663
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bu
g
2
6
6
3
]
commit
|
commitdiff
|
tree
2008-11-24
c
j
fields
[bug 263
0
]
commit
|
commitdiff
|
tree
2008-11-24
cjfiel
d
s
[bug
2
2
6
2
]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[
b
ug 2
6
30]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* Doubl
e
-
c
hecked
data, tes
t
ed r
e
sul
t
s were wrong
commit
|
commitdiff
|
tree
2008-11-18
cjfiel
d
s
* seq_inds is not def
i
ned fo
r
M
odel-
b
ased HSPs
commit
|
commitdiff
|
tree
2008-11-18
cjf
i
elds
* fix
P
OD
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'
h
ig
h
l
y' (and
I
get
r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
R
emove red
u
n
d
a
nt t
e
st files
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[t
e
sts]
commit
|
commitdiff
|
tree
2008-11-17
c
j
fields
m
ove res
u
lts2
h
ash test
ut
i
lit
y
su
b
to SearchU
t
ils
commit
|
commitdiff
|
tree
2008-11-16
cjfield
s
[
b
ug 2663]
commit
|
commitdiff
|
tree
2008-11-16
c
jfiel
d
s
perlt
i
dy
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[bu
g
263
5
]
commit
|
commitdiff
|
tree
2008-11-14
cjfield
s
[bug 2656]
commit
|
commitdiff
|
tree
2008-11-11
c
jfiel
d
s
re
m
ove debugging
line
s
commit
|
commitdiff
|
tree
2008-11-11
cjf
i
elds
re
m
ove fixed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
c
j
fi
e
lds
[bug 2
6
50]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clarify re
s
u
l
t
_
count (
d
iscussi
o
ns on mail
list per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cj
f
ields
[b
u
g 2
6
3
2]
commit
|
commitdiff
|
tree
2008-11-10
cjfields
[b
u
g 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wrap
t
ext
commit
|
commitdiff
|
tree
2008-11-04
c
jfields
* pars
e
'Fe
a
tures in this pa
r
t of subject se
q
u
ence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfield
s
* parse
'Features in this p
a
r
t of subject s
e
quence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bug 26
3
2
]
commit
|
commitdiff
|
tree
2008-10-29
cjfields
fix seq
_
inds(
)
; was
n
'
t
c
al
l
ing identical residue
s
for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfiel
d
s
[
b
ug 2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfields
[
bug
2
6
30]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
Fix un
l
ink(
)
warning
commit
|
commitdiff
|
tree
2008-10-26
c
j
f
ie
l
ds
en
d
= start if only s
t
ar
t
is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
u
se valid_
L
ocation to check Location state
commit
|
commitdiff
|
tree
2008-10-26
c
j
field
s
add
d
o
cs for Loc
a
tionI
m
ethod valid_Location
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
ds
[bug 262
1
]
commit
|
commitdiff
|
tree
2008-10-26
c
j
fields
[bug 2
6
2
1]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 2624]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug
2
6
21]
commit
|
commitdiff
|
tree
2008-10-25
cjf
i
elds
bullet-proo
f
proto
t
ype test
commit
|
commitdiff
|
tree
2008-10-22
cjf
i
eld
s
fix file proper
t
ies
commit
|
commitdiff
|
tree
2008-10-22
cj
f
ield
s
new mod
u
le for pa
r
sing vecsc
r
e
en -f
3 o
u
tput, courtesy
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
cjfields
ad
d
-source for
ARP
commit
|
commitdiff
|
tree
2008-10-15
cjfiel
d
s
[bug 2563]
commit
|
commitdiff
|
tree
2008-10-10
cjfields
typo
commit
|
commitdiff
|
tree
2008-10-10
cjfields
[
bug 2519
]
commit
|
commitdiff
|
tree
2008-10-10
cjfields
[
b
u
g 2519]
commit
|
commitdiff
|
tree
2008-10-07
cjfiel
d
s
a
d
d svn
tag
commit
|
commitdiff
|
tree
2008-10-07
cjfields
TODO's
w
ork
commit
|
commitdiff
|
tree
2008-10-07
cjfields
[bug 261
2
]
commit
|
commitdiff
|
tree
2008-10-07
cjfields
[bug
2
61
2
]
commit
|
commitdiff
|
tree
2008-10-02
cjf
i
elds
clean
up XM
F
A pa
r
sin
g
,
allow spa
c
es
i
n
parsing
(
ende
.
.
.
commit
|
commitdiff
|
tree
2008-09-27
cjfields
[BU
G
] bug
2
598
commit
|
commitdiff
|
tree
2008-09-26
c
j
fiel
d
s
[BU
G
] bugfix for # 2598 (add 'J')
commit
|
commitdiff
|
tree
2008-09-26
cjfields
[BUG]
bug 25
9
3
commit
|
commitdiff
|
tree
2008-09-26
cjfi
e
lds
[BU
G
] fi
x
bug 25
9
5
commit
|
commitdiff
|
tree
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