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bp_pairwise_kaks.pl: do not mix space and tabs for indentation.
2015-11-29
C
a
rnë Draug
b
p
_
p
a
irw
i
se_kaks
.
pl: do not
mix space and tabs for
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë
D
raug
Bio::Align:
:
U
t
i
l
i
tie
s
-
remove usage of
/r
o
p
tion to
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë D
r
a
ug
F
i
x nonsen
s
e
i
n c
o
d
e
comme
n
ts
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë Draug
Bio::
A
lign::
U
tilities - follow some
perl bes
t
p
ractices
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë
D
r
aug
Bio::A
l
ig
n
:
:Util
i
ties - new function most
_
com
m
on_sequences
commit
|
commitdiff
|
tree
2013-11-26
Carnë Draug
B
i
o::Simp
l
e
Align - fol
l
ow
some perl
best p
r
actices
commit
|
commitdiff
|
tree
2013-04-04
Carnë Draug
maint:
remove file
s
that hav
e
been move
d
t
o
a sep
a
rate
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carn
ë
Draug
main
t
:
update Chan
g
es after rem
o
ving files from
Bio
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë
Draug
maint: remove files that have bee
n
m
ov
e
d to a
sep
a
rate
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
tests
:
m
o
ve tests
fr
o
m
Roo
t
t
o Assembly a
n
d SeqIO
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Carnë Draug
maint
:
remove hard tabs and trail
i
ng
w
hites
p
ace
commit
|
commitdiff
|
tree
2013-03-28
Carnë Dr
a
ug
tests fo
r
inheritance shou
l
d be
l
o
ng o
n
the c
h
ild cla
s
s
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Carnë Dr
a
ug
remo
v
e ha
r
d
t
a
b
s and trailing whi
t
espace from some
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Carnë Draug
A
n
notation: fix
t
ypo on test
commit
|
commitdiff
|
tree
2013-03-26
C
a
rnë Draug
Bio::Clu
s
ter::Seq
u
enceFa
m
ily
-
b
u
g fixes and performance
commit
|
commitdiff
|
tree
2013-03-26
Carnë Draug
doc:
f
i
x inden
t
ation, remove hard
tabs an
d
t
r
a
iling
.
.
.
commit
|
commitdiff
|
tree
2013-03-21
Carnë Draug
rec
o
v
e
r Generi
c
WebAgen
t
from Bio-EUtilities
commit
|
commitdiff
|
tree
2013-03-13
Car
n
ë Draug
split Bio-Biblio int
o
a separate distribution
commit
|
commitdiff
|
tree
2013-03-12
C
a
rnë
Drau
g
Merge pull req
u
e
s
t #53
fr
o
m bvaisvil/master
commit
|
commitdiff
|
tree
2013-03-06
C
arnë D
r
aug
Bio::Perl - fix indentatio
n
(remove tabs, and weird
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
C
arn
ë
Draug
D
o
n
't
use a separate default sca
l
ar wh
e
n th
e
re's
a
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
fo
l
low perl r
e
commendations:
commit
|
commitdiff
|
tree
2013-03-04
Ca
r
në Drau
g
fix inde
n
ta
t
ion (
r
emove tabs, and weird 3 s
p
aces i
n
dentation)
commit
|
commitdiff
|
tree
2013-03-04
Carnë D
r
aug
follow perl recommendations:
commit
|
commitdiff
|
tree
2013-03-04
C
a
r
n
ë Draug
u
s
e until instead of
w
h
ile(1){last if
.
.
.
}
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
fix indentation (remove tabs, 3
s
pace and 2
space indent
a
tio
n
)
commit
|
commitdiff
|
tree
2013-02-11
Carnë
Draug
r
emovin
g
B
io
:
:FeatureIO and Bio::SeqFeature::Annotated
.
.
.
commit
|
commitdiff
|
tree
2013-02-06
Carnë
Draug
maint:
m
en
t
ion rece
n
t changes to Bio::SeqIO
:
:fasta
commit
|
commitdiff
|
tree
2013-02-06
Carnë Dr
a
ug
Bio::
S
eqIO::fasta - remove p
a
ckage variables for defaults
commit
|
commitdiff
|
tree
2013-02-05
Carnë Draug
Bio::SeqIO::fasta - i
m
plement block meth
o
d for
pr
e
tt
y
.
.
.
commit
|
commitdiff
|
tree
2013-02-05
Carnë
D
raug
f
ollow per
l
recommend
a
tions:
commit
|
commitdiff
|
tree
2013-01-28
Carnë Draug
fin
i
sh moving the Bio-D
B
-EUtilities to the
Bio-EUtilit
i
es
.
.
.
commit
|
commitdiff
|
tree
2013-01-28
Carnë Draug
Fix
i
ng POD documentati
o
n
.
Em
p
ty lin
e
before =c
u
t to
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë D
r
aug
genbank_r
e
f_extractor
:
m
ove 're
q
uire's
to GetO
p
tions
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë Draug
genban
k
_ref_ex
t
ract
o
r: chan
g
e
d
d
e
fault
a
s
s
embly regex
commit
|
commitdiff
|
tree
2011-09-28
Carnë Draug
g
e
n
bank_re
f
_extract
o
r: s
m
all typo on
documentation
commit
|
commitdiff
|
tree
2011-09-28
Carnë Draug
g
enbank_ref_extract
o
r: added as
s
embly t
o
exported data
commit
|
commitdiff
|
tree
2011-09-22
Carnë
D
raug
gen
b
ank_ref_extractor: typo on al
l
inst
a
nces
o
f
var
.
.
.
commit
|
commitdiff
|
tree
2011-09-22
C
a
rnë Draug
genbank_ref_extractor:
small
fixes on POD docum
e
ntation
commit
|
commitdiff
|
tree
2011-09-21
Carnë Draug
genbank
_
r
ef_
e
x
t
rac
t
or: new scrip
t
t
o
make search on
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Ca
r
në Draug
F
ix bug
when using STDOUT or writing t
o
file without
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Carnë D
r
aug
I
m
provements to P
O
D
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
replaced identatio
n
tabs
f
or spaces
commit
|
commitdiff
|
tree
2011-07-25
C
a
rnë Draug
Don't mess with $^W
.
Control with w
a
r
nings pragm
a
instead
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
s
c
r
ipts: added 'use warnings' to all scripts without it
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
scripts: repla
c
e
d
-w swi
t
ch by use warning
s
commit
|
commitdiff
|
tree
2011-07-20
C
arnë Dr
a
ug
S
c
r
ipt documentati
o
n
f
i
x
to match
t
h
eir name
s
with
.
.
.
commit
|
commitdiff
|
tree
2011-07-19
Carnë Draug
Renamed
a
l
l scripts with prfix bp_
commit
|
commitdiff
|
tree