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bp_pairwise_kaks.pl: do not mix space and tabs for indentation.
2015-11-29
Carnë Draug
bp
_
pairwise_kaks
.
p
l
: do not
m
ix space
a
nd t
a
bs
f
or
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë Drau
g
Bio::Align::Utilities -
remove
usag
e
o
f /r
option to
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë D
r
aug
Fi
x
nonsense in co
d
e comments
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë Draug
Bio::Align::Utilit
i
es - f
o
llow so
m
e perl best practices
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë
D
raug
Bio::
A
li
g
n::Utilities - new func
t
ion most_common
_
sequence
s
commit
|
commitdiff
|
tree
2013-11-26
Carnë Draug
Bio::Simpl
e
A
lign - follow some p
e
rl b
e
st practices
commit
|
commitdiff
|
tree
2013-04-04
Ca
r
në Draug
main
t
: remove files th
a
t ha
v
e
been
m
oved
t
o
a
sep
a
rate
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
main
t
:
u
pdate Change
s
after removing files fro
m
Bio
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
maint: remove files that have
b
ee
n
moved to a separate
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
tests: move tests from Root to Asse
m
bly and SeqI
O
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
C
a
r
në
Draug
maint: remo
v
e hard tabs a
n
d
t
railing whitespace
commit
|
commitdiff
|
tree
2013-03-28
Ca
r
në Draug
tests for inheritance should belong o
n
the child class
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
C
arnë Draug
remove hard tabs a
n
d
t
railing wh
i
tespace from some
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
C
a
rnë
D
raug
A
nn
o
tation: f
i
x
typo on test
commit
|
commitdiff
|
tree
2013-03-26
Carn
ë
D
r
aug
Bio::Cluste
r
::Seq
u
enceF
a
mily - bug fixes and performa
n
ce
commit
|
commitdiff
|
tree
2013-03-26
C
arnë Draug
doc:
f
ix indentation
,
re
m
ove hard t
a
bs and trailing
.
.
.
commit
|
commitdiff
|
tree
2013-03-21
Carnë Draug
re
c
over Generic
W
ebAgent from Bio-EUtilities
commit
|
commitdiff
|
tree
2013-03-13
C
a
rnë Draug
split Bio
-
Biblio into a separate distributio
n
commit
|
commitdiff
|
tree
2013-03-12
Carnë Draug
Merge pull request #53
from bvaisvil/master
commit
|
commitdiff
|
tree
2013-03-06
C
a
r
në Draug
Bi
o
:
:
Perl -
f
ix indentation
(remov
e
tabs,
and we
i
r
d
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
Don't use a sepa
r
ate
default scalar when there's a
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
C
arnë Dr
a
u
g
follow pe
r
l re
c
ommendatio
n
s:
commit
|
commitdiff
|
tree
2013-03-04
Carn
ë
Draug
fix in
d
en
t
ation (remov
e
tabs
,
and
w
eird 3 spaces
i
n
d
entat
i
on)
commit
|
commitdiff
|
tree
2013-03-04
Ca
r
në
D
raug
foll
o
w
p
erl recommendat
i
o
n
s:
commit
|
commitdiff
|
tree
2013-03-04
Carnë Dr
a
ug
use until instead of while(1){
l
ast if
.
.
.
}
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
fix ind
e
ntation (re
m
o
v
e tabs
,
3 spac
e
and 2 spa
c
e inden
t
atio
n
)
commit
|
commitdiff
|
tree
2013-02-11
Ca
r
në Dra
u
g
removing Bio::Fe
a
tureIO
a
nd Bio::
S
e
q
Featur
e
::Annotated
.
.
.
commit
|
commitdiff
|
tree
2013-02-06
Carnë Draug
maint: menti
o
n re
c
ent cha
n
ges to Bio::SeqIO:
:
f
asta
commit
|
commitdiff
|
tree
2013-02-06
Carnë Drau
g
Bi
o
::Se
q
I
O
::fasta
-
remove pac
k
ag
e
variables for defaults
commit
|
commitdiff
|
tree
2013-02-05
C
a
rnë
D
raug
Bio::SeqIO::fasta - imp
l
e
ment block method for prett
y
.
.
.
commit
|
commitdiff
|
tree
2013-02-05
Carnë Draug
follow per
l
reco
m
m
endations:
commit
|
commitdiff
|
tree
2013-01-28
C
arnë Draug
f
i
nish moving the Bio-D
B
-EUtilities to
th
e
Bio
-
EUtilit
i
es
.
.
.
commit
|
commitdiff
|
tree
2013-01-28
Carnë
Draug
Fixing P
O
D documenta
t
i
on
.
E
m
p
ty li
n
e
before =
c
ut to
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë Dra
u
g
genbank_ref_extractor: mov
e
'req
u
ire's t
o
GetOptions
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë D
r
aug
genbank_
r
ef_extractor:
c
h
anged d
e
fault ass
e
mb
l
y regex
commit
|
commitdiff
|
tree
2011-09-28
C
a
rnë Draug
genbank_r
e
f_extractor
:
s
mall typo on doc
u
mentation
commit
|
commitdiff
|
tree
2011-09-28
Carn
ë
D
r
a
ug
genbank_ref_ext
r
actor: added assembly to exported da
t
a
commit
|
commitdiff
|
tree
2011-09-22
Carnë Draug
g
e
nbank
_
ref_extractor:
t
yp
o
on all instances of var
.
.
.
commit
|
commitdiff
|
tree
2011-09-22
Carnë Draug
genbank_
r
e
f
_extractor
:
small fixes on POD documentation
commit
|
commitdiff
|
tree
2011-09-21
Carnë Draug
genbank_r
e
f_ext
r
acto
r
:
new script to ma
k
e search on
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Carnë Dra
u
g
Fix bug
w
hen using STDOUT
o
r
writing to file
w
ithout
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Carnë
Draug
Improv
e
ments to
POD
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
r
e
placed identation tabs
f
or
s
paces
commit
|
commitdiff
|
tree
2011-07-25
Carnë
D
raug
Don't
m
es
s
with $^W
.
Control with warni
n
gs pragma instead
commit
|
commitdiff
|
tree
2011-07-25
Carnë Dr
a
ug
scripts:
added 'use w
a
rn
i
ngs
'
to
a
ll scripts without
i
t
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
script
s
: replaced
-w
swi
t
ch
b
y use warnings
commit
|
commitdiff
|
tree
2011-07-20
C
a
rnë D
r
aug
Script docu
m
entati
o
n fix to ma
t
c
h t
h
eir
n
a
mes with
.
.
.
commit
|
commitdiff
|
tree
2011-07-19
Carn
ë
Draug
Renam
e
d
all
scri
p
ts with prfix bp_
commit
|
commitdiff
|
tree