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update Mauricio's email
2008-12-09
cjfields
updat
e
Mauricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
lds
Up
d
ate Roy's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Roy's e
m
ail
(
and bio
p
erl
.
org not bioperl
.
edu)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
U
p
da
t
e
d
emails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bug
2
699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to retrie
v
e the
t
ree for ou
t
pu
t
commit
|
commitdiff
|
tree
2008-12-05
c
jfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cj
f
ields
Make Target a true
DBLink
commit
|
commitdiff
|
tree
2008-12-04
cjfi
e
l
ds
D
i
rector
y
is n
o
long
e
r needed (
H
eik
k
i
s
p
lit this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
add fo
r
ce
_
nse tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
lea
v
e ID und
e
fined i
f
it isn
'
t present, but all
o
w the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Remove files accident
l
y added from last c
o
mmit
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
l
d
s
R
e
or
g
an
i
ze Tools tests (ne
e
ds some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
c
jfi
e
l
d
s
R
e
mov
e
(tests are redu
n
dant, in Conse
d
.
t
)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Merge t
e
s
ts and remove redundan
t
fil
e
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
Update test count
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
M
e
rge te
s
ts
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Remo
v
e
old
f
il
e
s
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
Start Tool
s
m
o
ve
commit
|
commitdiff
|
tree
2008-12-03
cjfields
sma
l
l up
d
ates:
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
forgot to increment test count
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
e
l
d
s
Add
a couple of tes
t
s for seq_id (small but
s
ig
n
ifican
t
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjf
i
elds
[
bu
g
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[
b
u
g 24
5
0]
commit
|
commitdiff
|
tree
2008-12-02
c
jfiel
d
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
som
e
pod updates
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
ie
l
ds
[bug 2
4
5
0
]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
i
e
lds
f
ix errone
o
usly renamed stockho
l
m
tests
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
s
m
al
l
pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
sil
e
nc
e
GuessSeqFormat
.
t
warn
i
ngs (not s
u
re
if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
r
earrange to avoid unneces
s
ary warnings
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ie
l
d
s
Add warning for missing
data (real bug
)
commit
|
commitdiff
|
tree
2008-11-28
cjfie
l
ds
hash re
f
, not a hash
commit
|
commitdiff
|
tree
2008-11-28
cjfields
test
f
ile na
m
e and test # correctio
n
commit
|
commitdiff
|
tree
2008-11-28
cjfields
correct test fi
l
e name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
'
:
:', not ':'
commit
|
commitdiff
|
tree
2008-11-28
cjfields
ren
a
me (recur
s
ive tests think this is a test file)
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
recurse
in
t
o test subdirec
t
ories (
m
eans a
n
y no
n
-tes
t
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ields
r
e
move r
e
dundant copy
commit
|
commitdiff
|
tree
2008-11-28
cj
f
iel
d
s
move into dir
e
ctor
y
s
t
ru
c
ture
commit
|
commitdiff
|
tree
2008-11-28
cjfields
move into directory structu
r
e (Da
v
eM++)
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
eld
s
[bug
2
5
6
7
]
commit
|
commitdiff
|
tree
2008-11-26
cj
f
i
e
lds
Red
u
ndant; file
was renamed SearchI
O
_
blast
_
p
u
ll
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfie
l
ds
[bu
g
2686]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
fix su
b
version tags
commit
|
commitdiff
|
tree
2008-11-25
c
j
f
iel
d
s
p
o
, n
o
t p
o
a
commit
|
commitdiff
|
tree
2008-11-25
cjfields
fix undefined
v
al
u
e warnings
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[b
u
g
2
686]
commit
|
commitdiff
|
tree
2008-11-25
c
j
fi
e
ld
s
[bug 2
6
4
1
, 2642
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
split up AlignIO tests
commit
|
commitdiff
|
tree
2008-11-25
c
jf
i
elds
[
bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfi
e
lds
[bug
2
6
33]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
c
jfi
e
lds
[bu
g
2663]
commit
|
commitdiff
|
tree
2008-11-24
cj
f
i
e
lds
[bug 26
3
0]
commit
|
commitdiff
|
tree
2008-11-24
cj
f
i
e
ld
s
[bug
2262]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[b
u
g 2630]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
*
Double-checked data, tested results
w
e
re wr
o
n
g
commit
|
commitdiff
|
tree
2008-11-18
c
j
fields
* se
q
_inds is not defin
e
d
f
or Model
-
b
as
e
d
HSPs
commit
|
commitdiff
|
tree
2008-11-18
cj
f
ields
* fix POD
commit
|
commitdiff
|
tree
2008-11-17
c
j
fields
* 'highly' (and I get r
1
5000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
Remo
v
e
redundant test file
s
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[
tests]
commit
|
commitdiff
|
tree
2008-11-17
cjfields
move r
e
sults2hash
tes
t
utility sub to SearchUtils
commit
|
commitdiff
|
tree
2008-11-16
c
jfields
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
perl
t
idy
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[bug 2635]
commit
|
commitdiff
|
tree
2008-11-14
cj
f
i
e
lds
[bug 2656]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
remove debuggin
g
lines
commit
|
commitdiff
|
tree
2008-11-11
cj
f
ield
s
remove fixe
d
verbose flag
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
[
b
u
g
2
6
50
]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
C
l
ar
i
f
y resu
l
t_count (discussi
o
ns on mail list per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cj
f
ields
[bug 2632]
commit
|
commitdiff
|
tree
2008-11-10
cjfields
[bug 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wra
p
tex
t
commit
|
commitdiff
|
tree
2008-11-04
c
jfields
*
parse 'Features
i
n this part of subject se
q
uence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* parse
'
Features
in this
p
art of subject sequ
e
nce
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
c
jfields
[bug 263
2
]
commit
|
commitdiff
|
tree
2008-10-29
cj
f
ield
s
fix seq
_
inds(); w
a
sn't calli
n
g ide
n
tical re
s
id
u
es
f
or
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfields
[bug 2
6
33]
commit
|
commitdiff
|
tree
2008-10-28
c
jfields
[bug
2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
F
ix u
n
l
i
nk() wa
r
nin
g
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
d
s
end
=
start if only
start is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use val
i
d_Loc
a
t
i
on to check Lo
c
ation state
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
ds
add docs
for Lo
c
at
i
onI method valid_Location
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[b
u
g 2621]
commit
|
commitdiff
|
tree
2008-10-26
c
j
fie
l
ds
[bu
g
2621]
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
ds
[bug 2624]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug
26
2
1]
commit
|
commitdiff
|
tree
2008-10-25
cjfie
l
ds
bullet-proof prot
o
type test
commit
|
commitdiff
|
tree
2008-10-22
cjfields
fix f
i
le properties
commit
|
commitdiff
|
tree
2008-10-22
cj
f
ie
l
ds
new mo
d
ule for parsin
g
ve
c
screen -f 3
o
utput, courtes
y
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
cjfields
add -sou
r
c
e
for A
R
P
commit
|
commitdiff
|
tree
2008-10-15
cj
f
ields
[b
u
g 2563]
commit
|
commitdiff
|
tree
2008-10-10
cjf
i
elds
t
ypo
commit
|
commitdiff
|
tree
2008-10-10
cjfields
[bug 2519]
commit
|
commitdiff
|
tree
2008-10-10
cjfie
l
ds
[bug 2519]
commit
|
commitdiff
|
tree
next