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2008-12-03
cjfields
Remove (tests are redund
a
nt, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Me
r
ge tests and rem
o
ve redu
n
dant fil
e
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Update test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge
tests
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remove redund
a
nt file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove old
f
iles
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Start Tools mov
e
commit
|
commitdiff
|
tree
2008-12-03
cjfields
small updates:
commit
|
commitdiff
|
tree
2008-12-03
cjfields
forgo
t
to
i
n
c
rement test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Ad
d
a couple of te
s
ts for seq_id
(sma
l
l bu
t
significant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
ields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
ds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ield
s
s
o
me pod u
p
da
t
es
commit
|
commitdiff
|
tree
2008-12-02
c
j
field
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
jfi
e
lds
fi
x
erroneousl
y
renamed
s
tockholm tes
t
s
commit
|
commitdiff
|
tree
2008-12-02
cjfields
smal
l
po
d
fix
commit
|
commitdiff
|
tree
2008-11-30
c
j
fiel
d
s
sile
n
ce GuessS
e
qF
o
r
mat
.
t
warn
i
ngs (n
o
t sure
i
f ol
d
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rearrange
t
o
avoid un
n
ecessary w
a
rnings
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
Ad
d
wa
r
n
ing for missing dat
a
(
real bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash
r
ef, not a hash
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
tes
t
file
n
ame
a
nd
tes
t
#
c
or
r
ection
commit
|
commitdiff
|
tree
2008-11-28
cjfields
cor
r
e
ct test f
i
le n
a
me
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
'::',
n
o
t ':'
commit
|
commitdiff
|
tree
2008-11-28
cjfields
r
e
n
a
me (re
c
u
r
sive tests
t
hi
n
k
t
his is a tes
t
file
)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rec
u
r
se
in
t
o
t
est sub
d
ir
e
c
t
ories
(
means any non-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
jfi
e
lds
remove
r
edundant
c
o
py
commit
|
commitdiff
|
tree
2008-11-28
cjfield
s
move int
o
dir
e
cto
r
y
s
truc
t
ure
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
move into directo
r
y structure (DaveM++)
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
el
d
s
[b
u
g 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
Redundant; file was re
n
amed SearchIO_b
l
ast
_
pull
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-26
cj
f
ields
fix subversion
tag
s
commit
|
commitdiff
|
tree
2008-11-25
cjfields
p
o
, not poa
commit
|
commitdiff
|
tree
2008-11-25
cjfields
fix undefined v
a
lue w
a
r
n
in
g
s
commit
|
commitdiff
|
tree
2008-11-25
cjfie
l
d
s
[
bug 26
8
6]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2641, 2642
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
s
p
lit u
p
AlignI
O
t
ests
commit
|
commitdiff
|
tree
2008-11-25
c
j
fiel
d
s
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[
b
ug 2
6
3
0]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[b
u
g
2
63
3
]
commit
|
commitdiff
|
tree
2008-11-24
cjfiel
d
s
[bug 26
6
3]
commit
|
commitdiff
|
tree
2008-11-24
cjf
i
elds
[
bug 2663
]
commit
|
commitdiff
|
tree
2008-11-24
cjfi
e
lds
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
c
jfie
l
ds
[bug 2262
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug
2630]
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* Double-checked
d
a
ta, te
s
ted res
u
lts were wrong
commit
|
commitdiff
|
tree
2008-11-18
cj
f
i
elds
* s
e
q_in
d
s is not
d
e
fined for Model-b
a
sed
H
SPs
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* fi
x
POD
commit
|
commitdiff
|
tree
2008-11-17
cjf
i
elds
* 'highly' (and
I
g
et r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
R
emov
e
r
e
dundant test file
s
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[tests]
commit
|
commitdiff
|
tree
2008-11-17
cjf
i
elds
move results2has
h
test ut
i
lity sub to SearchUtils
commit
|
commitdiff
|
tree
2008-11-16
cjfie
l
ds
[bug 2
6
63]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
pe
r
ltid
y
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[bug 2635]
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[bug 2656
]
commit
|
commitdiff
|
tree
2008-11-11
c
j
fie
l
ds
remove debugging
l
ines
commit
|
commitdiff
|
tree
2008-11-11
c
j
fields
remove fixed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
c
jfields
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clari
f
y result_
c
o
un
t
(dis
c
u
s
si
o
ns on ma
i
l
list pe
r
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cjfi
e
lds
[bug 2632]
commit
|
commitdiff
|
tree
2008-11-10
cjfields
[bug 2645]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wrap
text
commit
|
commitdiff
|
tree
2008-11-04
cjfield
s
* parse 'Features in this p
a
rt
o
f subj
e
ct sequence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfi
e
lds
* par
s
e
'
Feat
u
res in this part of subject sequence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bug 263
2
]
commit
|
commitdiff
|
tree
2008-10-29
cjfields
fix seq_inds(); wasn't calli
n
g identic
a
l residue
s
for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
c
j
fi
e
lds
[bu
g
2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfie
l
ds
[b
u
g 2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
Fix unlink()
w
a
r
n
ing
commit
|
commitdiff
|
tree
2008-10-26
c
jfields
end
= start if onl
y
sta
r
t is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use valid_Loc
a
tion to check Location state
commit
|
commitdiff
|
tree
2008-10-26
cjfields
a
d
d doc
s
for
L
ocationI method valid_Locat
i
on
commit
|
commitdiff
|
tree
2008-10-26
cjfi
e
lds
[b
u
g 2
6
21]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 2621
]
commit
|
commitdiff
|
tree
2008-10-26
cjf
i
e
lds
[bu
g
2624]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[
bug 2621]
commit
|
commitdiff
|
tree
2008-10-25
cjfields
bullet-pro
o
f
prototype test
commit
|
commitdiff
|
tree
2008-10-22
cjfields
fix
f
ile
properties
commit
|
commitdiff
|
tree
2008-10-22
cjfields
new
m
odule
for
parsing vecscreen -f 3 output, courtesy
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
cjfields
a
d
d -source for ARP
commit
|
commitdiff
|
tree
2008-10-15
cj
f
ields
[bug 2563]
commit
|
commitdiff
|
tree
2008-10-10
cjfi
e
lds
typo
commit
|
commitdiff
|
tree
2008-10-10
cjfields
[bu
g
2519]
commit
|
commitdiff
|
tree
2008-10-10
cjfi
e
lds
[bug 2519]
commit
|
commitdiff
|
tree
2008-10-07
cjfiel
d
s
add svn
t
a
g
commit
|
commitdiff
|
tree
2008-10-07
cjfields
TOD
O
's work
commit
|
commitdiff
|
tree
2008-10-07
c
jfiel
d
s
[bug
2612]
commit
|
commitdiff
|
tree
2008-10-07
cjfiel
d
s
[bug
2612]
commit
|
commitdiff
|
tree
2008-10-02
c
jfi
e
ld
s
clea
n
up XM
F
A parsing, allow
sp
a
ces in
parsing (end
e
.
.
.
commit
|
commitdiff
|
tree
2008-09-27
cjfields
[BUG]
bug 2598
commit
|
commitdiff
|
tree
2008-09-26
cjfields
[B
U
G] bugfix
for # 2598
(
a
dd 'J
'
)
commit
|
commitdiff
|
tree
2008-09-26
cjfiel
d
s
[B
U
G] bug
2593
commit
|
commitdiff
|
tree
2008-09-26
cjfields
[BUG] fix
bug 2595
commit
|
commitdiff
|
tree
2008-09-18
cjfields
Use 'w
a
rni
n
g
_like' for instances where a regex match
.
.
.
commit
|
commitdiff
|
tree
2008-09-17
cjfiel
d
s
* N
o
longer a s
t
ub
commit
|
commitdiff
|
tree
2008-09-17
cjfie
l
ds
1
965 +
6
-1 = 1970, not 19
9
9
commit
|
commitdiff
|
tree
2008-09-17
c
jfi
e
lds
passing T
O
D
O's (?!?)
commit
|
commitdiff
|
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