| 2021-02-03 |
Chris Fields | v1.7.8
|
commit | commitdiff | tree |
| 2021-02-03 |
Chris Fields | remove Bio::SeqIO::interpro (which now lives in a separate...
|
commit | commitdiff | tree |
| 2019-12-07 |
Chris Fields | v1.7.7
|
commit | commitdiff | tree |
| 2019-12-07 |
Chris Fields | update for release
|
commit | commitdiff | tree |
| 2019-12-07 |
Chris Fields | remove more sort issues and put the test in original...
|
commit | commitdiff | tree |
| 2019-12-07 |
Chris Fields | fix perms
|
commit | commitdiff | tree |
| 2019-12-07 |
Chris Fields | sort was based on object memory location (which is...
|
commit | commitdiff | tree |
| 2019-12-06 |
Chris Fields | bump version
|
commit | commitdiff | tree |
| 2019-09-25 |
Chris Fields | update with Bio::DB::Query::WebQuery changes, per https...
|
commit | commitdiff | tree |
| 2019-09-23 |
Chris Fields | add sleep policy, which should be in place for any...
|
commit | commitdiff | tree |
| 2019-09-23 |
Chris Fields | #321 fix
|
commit | commitdiff | tree |
| 2019-09-22 |
Chris Fields | fix text wrapping with #321
|
commit | commitdiff | tree |
| 2019-09-22 |
Chris Fields | if no quotes are recommended, don't default back, see...
|
commit | commitdiff | tree |
| 2019-09-22 |
Chris Fields | fix some tests that don't work well with varying line...
|
commit | commitdiff | tree |
| 2019-03-09 |
Chris Fields | TBLASTN works as well, addresses #312
|
commit | commitdiff | tree |
| 2019-02-27 |
Chris Fields | short-term fix for #313, but this test probably needs...
|
commit | commitdiff | tree |
| 2019-02-08 |
Chris Fields | remove maintenance scripts; these will be in git history...
|
commit | commitdiff | tree |
| 2019-02-08 |
Chris Fields | remove models; these will be in history and are largely...
|
commit | commitdiff | tree |
| 2018-09-25 |
Chris Fields | add SOFA as well
|
commit | commitdiff | tree |
| 2018-09-25 |
Chris Fields | fix URLs, a number of these no longer work
|
commit | commitdiff | tree |
| 2018-03-20 |
Chris Fields | fix typos, not sure how this ever works; fixes #270
|
commit | commitdiff | tree |
| 2018-02-16 |
Chris Fields | change examples, refers to #268
|
commit | commitdiff | tree |
| 2018-02-16 |
Chris Fields | HTTP->HTTPS, but doesn't fix tests broken in #265
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Actually fix that 'Use of uninitialized value $m in...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Get rid of '"my" variable $seq masks earlier declaration...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Get rid of "Negative repeat count does nothing" warning
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Fix "Useless use of greediness modifier '?' in regex...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | fix MeSH uninit variable warnings, but this module...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Fix "Use of uninitialized value $m in bitwise and ...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | get rid of redeclaration warning
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | get rid of future uninit warnings
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | try bsd_glob() to get rid of dep warning in perl 5.26
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | fix precedence
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | get rid of "False [] range "\w-" in regex" warnings
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | get rid of "Bio::DB::IndexedBase::_strip_crnl redefined...
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Let's make sure it's actually returning something though
|
commit | commitdiff | tree |
| 2018-01-28 |
Chris Fields | Don't run a test checking the absolute value of the...
|
commit | commitdiff | tree |
| 2017-09-11 |
Chris Fields | update Changes
|
commit | commitdiff | tree |
| 2017-09-08 |
Chris Fields | fix remote test
|
commit | commitdiff | tree |
| 2017-09-08 |
Chris Fields | bump version
|
commit | commitdiff | tree |
| 2017-09-08 |
Chris Fields | fix flappy remote test
|
commit | commitdiff | tree |
| 2017-06-24 |
Chris Fields | test out 5.26
|
commit | commitdiff | tree |
| 2016-11-06 |
Chris Fields | [skip ci] add zip and bz2
|
commit | commitdiff | tree |
| 2016-11-06 |
Chris Fields | add slight update (with a little time traveling)
|
commit | commitdiff | tree |
| 2016-10-31 |
Chris Fields | accession.version needed, related to #196
|
commit | commitdiff | tree |
| 2016-09-26 |
Chris Fields | bump this version to avoid any collisions
|
commit | commitdiff | tree |
| 2016-09-26 |
Chris Fields | minor version bump
|
commit | commitdiff | tree |
| 2016-09-26 |
Chris Fields | add VERSION to META.json and META.yml, refs #87
|
commit | commitdiff | tree |
| 2016-09-25 |
Chris Fields | bump to release
|
commit | commitdiff | tree |
| 2016-09-20 |
Chris Fields | add some changes
|
commit | commitdiff | tree |
| 2016-09-20 |
Chris Fields | bump version
|
commit | commitdiff | tree |
| 2016-09-16 |
Chris Fields | deal with flaky ELM tests; if there are additional...
|
commit | commitdiff | tree |
| 2016-09-13 |
Chris Fields | logic fix for #182
|
commit | commitdiff | tree |
| 2016-09-11 |
Chris Fields | add note about upcoming GI changes
|
commit | commitdiff | tree |
| 2016-09-08 |
Chris Fields | get authors script kinda working
|
commit | commitdiff | tree |
| 2016-09-07 |
Chris Fields | Fix for revcom issues with MAF format from @dandaman...
|
commit | commitdiff | tree |
| 2016-09-07 |
Chris Fields | add some tests, refers to #170
|
commit | commitdiff | tree |
| 2016-08-02 |
Chris Fields | possible fix for #187
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | bump RC
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | requires a newer (but still old) perl
|
commit | commitdiff | tree |
| 2016-07-16 |
Chris Fields | update Changes (first of a few)
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | RT 103272 - fix for deleting features that have decimals
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | Incorporate recommended fix for RT98374; notably tests...
|
commit | commitdiff | tree |
| 2016-07-11 |
Chris Fields | add some tests for RT ticket, not a true bug but indicates...
|
commit | commitdiff | tree |
| 2016-07-09 |
Chris Fields | rm tests for modules, will check CI
|
commit | commitdiff | tree |
| 2016-07-09 |
Chris Fields | [ci skip] remove some deprecated/redundant modules
|
commit | commitdiff | tree |
| 2016-07-08 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-08 |
Chris Fields | add 5.24
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add MANIFEST to ignore
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add MANIFEST file on the fly
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove SOAP::Lite for realz, then test what is going...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Revert "Merge pull request #150 from jkeenan/missing_manifest"
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove the module and test, we will remove MANIFEST...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Revert "Removed Mitoprot support, a service that is...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | markdownize file, minimal changes (looks fairly up...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | convert to markdown and add some basic installation...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove older perl versions, no need to test these
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add in Debian patches courtesy, courtesy @mr-c and...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | add TODOs for tests, which need more investigation...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | run only if DB_File and other deps are present (and...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | bump RC number
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | kill some warnings temporarily, since these are actually...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | see if we can deal w/ some of the stocastic issues...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | remove other Biblio references; notable XML::Parser...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | get rid of SOAP::Lite req, used only for Bio::Biblio...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | bump version
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | fix dist names; the version munging was breaking release...
|
commit | commitdiff | tree |
| 2016-07-07 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'topic/ncbi-https' of github.com:bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | fix test count
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | NCBI http -> https
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | flatfile tests failed when compared to entrez tests...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | skip any enzymes with multiple cut sites with a warning...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add documentation to clarify seq() returning revcom...
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | move install docs to markdown
|
commit | commitdiff | tree |
| 2016-07-06 |
Chris Fields | add CGI, not in perl core after 5.22
|
commit | commitdiff | tree |
