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Squash warning
2008-12-09
cj
f
ields
Squash warning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag() on
l
y
on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
F
i
x
last loop tes
t
s, move
some to
can_ok
commit
|
commitdiff
|
tree
2008-12-09
cj
f
ields
Modify to test new temp classes and
e
nsure that added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfield
s
u
p
date Maur
i
cio's e
m
ail
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Update
R
oy's email
commit
|
commitdiff
|
tree
2008-12-08
c
jfiel
d
s
Roy's email (and bioperl
.
org not b
i
oper
l
.
ed
u
)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated e
m
a
ils
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[b
u
g 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to r
e
t
r
iev
e
th
e
tree for output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Target a
true
D
B
Link
commit
|
commitdiff
|
tree
2008-12-04
cjfi
e
lds
Directory
i
s no longer needed
(He
i
kki sp
l
i
t
this
u
p
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
a
d
d force_nse tes
t
s
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
leave ID und
e
fined if it isn't pr
e
s
e
nt, but
a
llo
w
the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
Remove files accidently added
from la
s
t co
m
mit
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
R
e
o
r
g
a
n
i
z
e Tools tests (needs some
more spli
t
t
ing)
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
ld
s
Remove
(
te
s
ts are redundant, in
C
onsed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge
tests and re
m
o
ve redundant fi
l
e
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
U
pdate tes
t
cou
n
t
commit
|
commitdiff
|
tree
2008-12-03
c
j
fiel
d
s
Merge te
s
ts
commit
|
commitdiff
|
tree
2008-12-03
cjfields
R
e
move redundan
t
file
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Rem
o
v
e old
f
iles
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Start
T
ools move
commit
|
commitdiff
|
tree
2008-12-03
c
jfield
s
smal
l
updates
:
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
fo
r
got to
i
ncrement test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Add a cou
p
l
e
o
f t
e
sts for seq_
i
d (small but significant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 24
5
0]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
[bug
2
450]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
[
b
u
g
2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
some pod upd
a
tes
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
[
b
ug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
fix errone
o
usly r
e
name
d
stockho
l
m tests
commit
|
commitdiff
|
tree
2008-12-02
c
jfields
small p
o
d
fix
commit
|
commitdiff
|
tree
2008-11-30
cjfi
e
l
d
s
silence GuessSeqF
o
rmat
.
t warnings (n
o
t sure if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
r
earran
g
e to
a
void u
n
n
ecessary warn
i
ngs
commit
|
commitdiff
|
tree
2008-11-28
cjfields
Add warning
for missin
g
d
ata (real bu
g
)
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
i
elds
hash ref, not a
h
ash
commit
|
commitdiff
|
tree
2008-11-28
cjfields
tes
t
fil
e
name and test
#
c
orr
e
ct
i
on
commit
|
commitdiff
|
tree
2008-11-28
cjfields
correct test file name
commit
|
commitdiff
|
tree
2008-11-28
cjfields
'
::', n
o
t
':'
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
rename (recurs
i
ve
t
ests think this is a test
f
il
e
)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
recurse
i
nto tes
t
subdirectories
(
means
a
ny non-test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
remove re
d
undan
t
c
o
py
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
el
d
s
m
o
v
e
into directo
r
y st
r
ucture
commit
|
commitdiff
|
tree
2008-11-28
cjfie
l
ds
move int
o
dir
e
c
t
o
r
y str
u
ct
u
re (Dav
e
M++)
commit
|
commitdiff
|
tree
2008-11-26
cjfield
s
[bug 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfi
e
l
ds
Redund
a
nt; fil
e
was renamed SearchIO_blast_p
u
ll
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cj
f
ields
[bug 26
8
6]
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
el
d
s
fix subve
r
s
ion
t
ags
commit
|
commitdiff
|
tree
2008-11-25
cj
f
ields
p
o
, not po
a
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
l
d
s
fix u
n
defined value
warnings
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 268
6
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[b
u
g
2641
,
2642]
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
lds
s
plit
u
p AlignIO test
s
commit
|
commitdiff
|
tree
2008-11-25
cjfie
l
ds
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
lds
[bug 2630
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[
bug 263
3
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663
]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
c
j
fie
l
ds
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfie
l
d
s
[
b
ug 2262]
commit
|
commitdiff
|
tree
2008-11-24
c
j
fields
[
b
u
g
2630]
commit
|
commitdiff
|
tree
2008-11-18
c
j
fields
*
Double-che
c
k
e
d data, tested
r
esults were
w
rong
commit
|
commitdiff
|
tree
2008-11-18
cjfie
l
ds
* seq_
i
n
ds
i
s not
d
ef
i
ned f
o
r
Model-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
cjfield
s
* fix POD
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'
highly
'
(and I get
r
15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfi
e
l
d
s
Remove redun
d
an
t
test files
commit
|
commitdiff
|
tree
2008-11-17
c
j
fields
[tests
]
commit
|
commitdiff
|
tree
2008-11-17
cjf
i
elds
mo
v
e results2hash test ut
i
lity su
b
to
SearchUtils
commit
|
commitdiff
|
tree
2008-11-16
cj
f
ields
[bug
2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfields
per
l
tidy
commit
|
commitdiff
|
tree
2008-11-16
cjfi
e
lds
[
bug 2635]
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[
bu
g
2656]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
remove debugging lines
commit
|
commitdiff
|
tree
2008-11-11
cjfields
remove fixed verbose flag
commit
|
commitdiff
|
tree
2008-11-11
cj
f
i
e
l
d
s
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfi
e
lds
Clarify
r
esult_count (discussio
n
s on mail list per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cjfields
[bug 2632
]
commit
|
commitdiff
|
tree
2008-11-10
cjfields
[bu
g
2
645
]
commit
|
commitdiff
|
tree
2008-11-04
cjfields
wrap text
commit
|
commitdiff
|
tree
2008-11-04
c
j
field
s
* pa
r
se 'Features in this part of subj
e
ct s
e
quence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
c
jf
i
eld
s
* parse 'Featur
e
s
i
n
t
his part of
s
ubj
e
ct
s
equence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[
b
ug 263
2
]
commit
|
commitdiff
|
tree
2008-10-29
cj
f
ields
f
i
x seq
_
inds(); was
n
't calling identic
a
l
r
esidues
f
or
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjfield
s
[bug 2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfiel
d
s
[
bug 2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
Fi
x
unlink() w
a
r
ning
commit
|
commitdiff
|
tree
2008-10-26
c
j
f
i
el
d
s
end = start if
o
n
l
y start is p
a
s
sed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use valid_L
o
cation to check Loc
a
tion state
commit
|
commitdiff
|
tree
2008-10-26
cjfields
add docs
for Locati
o
n
I method vali
d
_Location
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug
2
621
]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 262
1
]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 26
2
4]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-25
c
j
fiel
d
s
b
u
l
l
et-proof prototype tes
t
commit
|
commitdiff
|
tree
2008-10-22
cjfields
fix file p
r
operties
commit
|
commitdiff
|
tree
2008-10-22
cjfields
new module for parsing vecscreen -f
3
o
utput, c
o
u
rte
s
y
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
c
j
fie
l
ds
add -sour
c
e for
A
RP
commit
|
commitdiff
|
tree
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