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Squash warning
2008-12-09
cjfie
l
ds
Sq
u
ash w
a
rning
commit
|
commitdiff
|
tree
2008-12-09
cjfields
diag
(
)
only on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix la
s
t loo
p
t
ests, move some to
c
an_ok
commit
|
commitdiff
|
tree
2008-12-09
c
jf
i
e
l
ds
Mod
i
fy to
t
e
st ne
w
t
e
m
p
clas
s
es and ensure that adde
d
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update Mau
r
icio's e
m
ail
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
elds
Update Roy
'
s
ema
i
l
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Roy's emai
l
(an
d
b
iop
e
rl
.
org
n
ot bioper
l
.
e
d
u)
commit
|
commitdiff
|
tree
2008-12-08
cjfie
l
ds
Updated e
m
a
ils
commit
|
commitdiff
|
tree
2008-12-07
cj
f
ields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Nee
d
to
retrie
v
e the tree for output
commit
|
commitdiff
|
tree
2008-12-05
cjfi
e
lds
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make Target a true D
B
Link
commit
|
commitdiff
|
tree
2008-12-04
c
jfie
l
ds
Directory is no
l
o
nger needed (Hei
k
ki split
t
his up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
add forc
e
_nse t
e
sts
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
leave ID undefined if it isn
'
t present, but allow the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Remov
e
files accidently
added fr
o
m last c
o
mmit
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Reorga
n
ize Tools tests (needs
some more splitting)
commit
|
commitdiff
|
tree
2008-12-03
cjfield
s
Remove (tests are
redundant, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Merge
tests and remove redundant file
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Updat
e
tes
t
count
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Mer
g
e tests
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Remov
e
redundant
file
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
Remo
v
e o
l
d file
s
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Start
Tools move
commit
|
commitdiff
|
tree
2008-12-03
cjfields
small u
p
date
s
:
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
forgot to increment test count
commit
|
commitdiff
|
tree
2008-12-03
c
j
field
s
Add a
c
ou
p
le
of
tests for seq_id (smal
l
but sig
n
ificant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cj
f
ields
[
bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
d
s
[bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-02
cjfiel
d
s
so
m
e p
o
d updates
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug
245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
fix erroneousl
y
re
n
amed
stock
h
o
l
m
t
ests
commit
|
commitdiff
|
tree
2008-12-02
cjfield
s
small pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
silence Guess
S
eq
F
o
rmat
.
t war
n
ings (not
sure if
old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
re
a
rrange to avoid
unnecessary war
n
ings
commit
|
commitdiff
|
tree
2008-11-28
c
j
f
i
elds
A
dd
warning for missing data (real bug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash
r
ef,
n
o
t
a hash
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
test file name
and test #
c
orrectio
n
commit
|
commitdiff
|
tree
2008-11-28
cjfields
correc
t
test fil
e
n
am
e
commit
|
commitdiff
|
tree
2008-11-28
c
jfiel
d
s
'::',
n
ot
':'
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
l
d
s
rename (r
e
c
u
rsive tests
t
h
ink this is a test file)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
re
c
urse into test s
u
b
direct
o
ries (means any no
n
-
test
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
c
j
fields
remove
redund
a
nt copy
commit
|
commitdiff
|
tree
2008-11-28
cjfi
e
lds
m
ove into direc
t
ory stru
c
ture
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
elds
move i
n
to directory structure (
D
aveM++)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 2567]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
Redu
n
d
ant; file was rena
m
ed
Se
a
r
c
hIO_blas
t
_
pull
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-26
cjfiel
d
s
fix
su
b
version
t
ags
commit
|
commitdiff
|
tree
2008-11-25
cjfield
s
po, no
t
p
oa
commit
|
commitdiff
|
tree
2008-11-25
cjfields
fix
undefined value warnin
g
s
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
l
d
s
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug 2
6
4
1
,
2
6
4
2
]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
spli
t
up AlignIO te
s
ts
commit
|
commitdiff
|
tree
2008-11-25
cjfi
e
l
d
s
[bug 2
6
82]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[
b
ug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2
6
33]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 266
3
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-24
cjfi
e
l
ds
[b
u
g 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[bu
g
2262]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[bug 2630]
commit
|
commitdiff
|
tree
2008-11-18
cjf
i
elds
* Double-checked data, tested res
u
lts were wron
g
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* seq_in
d
s i
s
not defined for M
o
del-bas
e
d HS
P
s
commit
|
commitdiff
|
tree
2008-11-18
cjfields
* fix PO
D
commit
|
commitdiff
|
tree
2008-11-17
cjfields
*
'highly' (and
I
get r15000!)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
R
emove redundant te
s
t
fi
l
es
commit
|
commitdiff
|
tree
2008-11-17
cjfields
[
t
ests]
commit
|
commitdiff
|
tree
2008-11-17
cjfields
move
r
esults2hash test utility sub to
SearchUtils
commit
|
commitdiff
|
tree
2008-11-16
cjf
i
el
d
s
[bug 2663]
commit
|
commitdiff
|
tree
2008-11-16
cjfie
l
ds
perltidy
commit
|
commitdiff
|
tree
2008-11-16
cjfields
[bug 2
6
35]
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[bug
2656]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
re
m
ove debugging lines
commit
|
commitdiff
|
tree
2008-11-11
cjf
i
e
l
ds
remove
fixed verbos
e
flag
commit
|
commitdiff
|
tree
2008-11-11
cjfield
s
[bug 2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clarify result_count (discussions on mail list per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cjfields
[bug 2
6
3
2
]
commit
|
commitdiff
|
tree
2008-11-10
cjfi
e
lds
[bug
2
6
4
5]
commit
|
commitdiff
|
tree
2008-11-04
cjfield
s
wrap text
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* parse
'
Featu
r
es in this part
o
f subject
s
equence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* p
a
rs
e
'Features in this
p
art of subject sequence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bug 263
2
]
commit
|
commitdiff
|
tree
2008-10-29
cjfields
fi
x
seq_inds();
w
as
n
't calling identical residues fo
r
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cj
f
ields
[bu
g
2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfiel
d
s
[bug 2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfield
s
F
ix unlink() w
a
rning
commit
|
commitdiff
|
tree
2008-10-26
cjfield
s
en
d
= start
if onl
y
start is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use val
i
d
_Location t
o
check Location state
commit
|
commitdiff
|
tree
2008-10-26
cjfields
add
docs for
L
oc
a
tionI method v
a
l
i
d_Loc
a
tion
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug 26
2
1
]
commit
|
commitdiff
|
tree
2008-10-26
c
j
fi
e
lds
[bug
2
621
]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[bug
2624
]
commit
|
commitdiff
|
tree
2008-10-26
cjfields
[
b
ug 2621]
commit
|
commitdiff
|
tree
2008-10-25
cjfields
b
u
llet-proof pr
o
totype
t
est
commit
|
commitdiff
|
tree
2008-10-22
cjfield
s
fix f
i
l
e properties
commit
|
commitdiff
|
tree
2008-10-22
c
j
fields
ne
w
module for parsing ve
c
screen
-f 3 output, c
o
urtesy
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
c
j
field
s
a
d
d
-s
o
urce for ARP
commit
|
commitdiff
|
tree
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