A test to ensure Bio::PrimarySeqI->trunc() doesn't use clone() for a Bio::Seq::RichSe...
[bioperl-live.git] / t / data / test_singlets.cns.fastq
blob5bd7a575e56ec94303328604e2d3ddc9aa5979c4
1 @gi|65306796|gb|AY948116.1|
2 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagt
3 gcATAGCTTAGAAGAAAGCCTtgcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
4 nnnnattatgaaggtataaaatctGTTATAAGTAATCATGCGATAGAGAgTATttacatg
5 aatgaattagatattatcgctatgataaaacaaagTGCTTtaaagtTAAGTGCTGATGAA
6 atcattgctgannnnnnnnnnnagggatttgtagaatATGTCAAAAGTTGCCACCGCTCA
7 TTGCAATCCTAAAAAACAACCTGCATTAAACCACAATGATAGAaccaacgannnnnctaa
8 gacaatcactaaagAACTTACgcatttaaatgaatactcttgcactagcgatgaagtgcg
9 taagaacatagaaaggCTTTATAAAAAAGCTTATGAAAATTTTTATAAATATTGTGAAAA
10 TAAGAatggtttagctaaaagtggaannnnnnnnnnnnnnnnaaattttactaaaaaaga
11 aaaatgttatcacgagtttatnnnnnnnnnnnnnnnnnntactacaatggagcaatgcca
12 agAGcttacgcAAAAaatcGCAGAGCTTACAGGATTTACACCTTtacaagttgtaatnnn
13 nnnnnnnnnnntaagtgAGAATGCTAAAGGGGAAAAacaaacnnnnnnnnnnnnnnnngc
14 ggtattttttacactcgataacannnnnnnnnnnnnnnnnagacgtgaagcaagtttgaa
15 taaagccaatcttagcaaaatacaAACcctaaccgcacaaagtttaaaaatggagcgtGG
16 AGCTAATCGCTACGAGAAtaacgaaaagnnnnnnnnnnnnatacaagattataaaacata
17 cgctcnnnnntaagaacaagaaaaagcatTACTTCaaagAataCAAGAACAAGAGCATAA
18 ATTAACGCAaatggccctagaattgaannnnnnnnnnaaagagatacaagacaaggctaa
19 agagttaaaatcgaaagaaaACGAATTACAAGCGAAAATAGAGCAacAtcaaaaacatat
20 acaaaatttagAactAGGACACGAAAGAgctttaaAggaacttacacaagagtttgaaaa
21 nnnnnnnnnnnnnnnnnaaaacattttAACCTTTGGAAAATACAACGCCaaagtnnnnnn
22 agactatcagttaacaaagaatgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
23 naacaaagagcttgaatatttaAAATttgaatatCATAaagtcaaagatgaacgagatan
24 tttaaaaactttgtttgaGGCACACAAAACAAAAAATGTTaaatnnnnnnnnngactaaa
25 agaaatagGCAAATGGTGtgaaaaaaatttaagnnnnnngcagttaaaagaaatatttcc
26 attaaaannnnnnnnnnnnnnaaaagagcttaaatatcaaagaGCTTTTGAaaattcTTT
27 TGAACAAGCAAaaAGAAACGATagagggttTGGGTTTAGCAGATAGTTTTCTTTtttggt
28 gctttagcaaatcgcacctgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
29 nctgagTGCGTAGCACGGAAGACGGAcaaagcccaccgccctagaaaaaaaattactcaa
30 ctttttttgttTTTTCTCTCGCGCGCGtacgcgtacnnnnnnnnnnnnnnnnnnnnnnnn
31 nnnttcttatttttagggggctttctaagccctatatnnnnnnnnnnnnnnnnnnnnnnn
32 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgacaaaattctac
33 tattaaaacgnnaaaattctactattaaggggagaaaattctactattaaaacgacaaaa
34 tatttgacaaataTtgtttTAATATACTACAATAAAAAATCCGCCTTGAGTTTTCACTCt
35 tggcggaaatttaTCAATCAAGGCTAACTATGAAACgacatantaagcgttttgtgagat
36 tatacctaaaatttaggttttttaagcttaaagttgaannatttttctagcaaaaccgca
37 ggggCagagaaGCCCCTTGCCTTGATTGTCTTACTTTGGATATGCAAATGAGCGAAATAG
38 TTAAATATAATAATGATtttaatcttttannnnnncctgaaCTTAAAGCCATACAAATGG
39 atatgtnnntggctattatctcactaaccaaagannnnnnagaaaatacgccatttttaa
40 aaaagnnnnttaaccctgatagaAGAAAAATAATTATTCCGCAAAAGAAGTTTATTgaat
41 tatgtcggttaaannnnnnnnnnnnnnactataaagAAATTTTCTTTGCCATTGATGATT
42 GcttgaaaaaactttgcaattttcttatttcataccaannnnnnnnnnnnnnnatttATA
43 ATTTTGTTTGTTTTGAAGaagcaaatattattgnnnnnnnnnnnnatataacTTTACAAA
44 GTCGTTTTTACGATATGATAATAAataaaaaatttggtttcacagcctttgaattagccg
45 aatttgcagaacttnnnnnnnnnnnnnnnnnaactttatacagacttttAAAGCAATTTA
46 GAACCACAggcAAAgcttattttgagtgggaagaatnnnnnnngattatgaaaatacCTG
47 AAAATTATCGTCAAATAGATATAGACCAAAGaattttaaaannnnnnnnnaaagaactTT
48 CTAAAGAACGCTATCTTTTTGACCAAATCAGAgtgcctttTAAAaatcttgcttatgaaa
49 AAgaAaaaaccgcagggcgtgggcgcggcnnnnnnnnnncaggtattagctttactttTA
50 AACCtgAAAATATCCAAATGCAAAAGCTAGAAAATGAAAGTCAAAAAATAATgagcgatg
51 agcaaaaatatttaaagattntaaacaATATGAAACTTAATCAAGTTAGAtttgattatA
52 ATGACAAGCTTTGGCAATttaacgattttgatnttgatgaatttaaaattaTTGCAATag
53 AGCTTGTAagagatgaatacgagaannnnnnnnnnggaaatcatatgcacTTTAATGCTA
54 aaaatcaagagcagttttttaaaaTGATTGAAACCTTTAGAAAAGGTATtaggnnnnnnn
55 nnnnnnnnnnnntatctttaaaggatacaagctatccgccacttgtgccaagtgtcgagc
56 ntgtaaggggtgcaaccccttaaccCcactaataaaaatcaactaAAAtcaataaatgat
57 ttttttgattnnnnnn
59 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!?BBB
60 BBEEEEEEEEEEEEEEEEEEEB?????!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
61 !!!!??????????????????BBEEEEHEEEHHHHHHHHHHHHHHHEEBEEEBBBBBBB
62 BBBBBBBBBBBBBBBBBBBBBB?????????????EEEEEBBBBBBEEEEEEEEEEEEEE
63 ???????????!!!!!!!!!!!????????????BBBEEEEHHHHHHEEEEHKKNNNNQQ
64 QQNNNNNNNNNNNNQQNKNKKKKHHHKKKKKHHHHHHHHEEEEBBBBBB??!!!!!???B
65 BBBBBBBBBBBBBBEEEEEEEBBB????????BBBBBBB???????BBBBBBBBBBB???
66 ?????????BB???BBEEEEEEHHHHHHHHKNNNKKKKNNQNNNNNNKKKKKKKKHEEHH
67 HKKHEBBBBBBBBBBBBBBBBBB???!!!!!!!!!!!!!!!!??????????????BBBB
68 BBBBBBB??????????????!!!!!!!!!!!!!!!!!!???????????BBBBBBBBBB
69 BBEEBBBBBBBEEEEBBBBEEEEEHHHEEEEEHHHHEEEEEEEEBBBBB????????!!!
70 !!!!!!!!!!!?BBBBBEEEEEEEEEEEEEEEEEEEB?????!!!!!!!!!!!!!!!!??
71 ???????????????????????!!!!!!!!!!!!!!!!!????????????????????
72 ??BBB??????BBBBBBBBBBBBBEEEBBBBBBBBB????BBBBBBBBB????BBBBBEE
73 EEEHHEEEEEEEEEEEEEBBBBB?????!!!!!!!!!!!!????????????????????
74 ?????!!!!!+????BBBBBBBBBBBBBBEEEEEEBBBBEBBBEHHHHKKKKKKHHHHHH
75 HHKKHHHHEBBBB??????????????!!!!!!!!!!?????????BBBBBBBBBBBBBB
76 BB??????????????BBBBEEEHHHKKKKKKKKKKHHHHHEEEEBBEBBB?????????
77 ???BBBBBBBBEBBBEEEEEEEEEEEEEBBBBBBBEBBBB????????????????????
78 !!!!!!!!!!!!!!!!!???????BBBEEHHHHHHHHHHHHHEEEEEEEBBB??!!!!!!
79 ?????????????????????????!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
80 !????????????BBBBBBBBBEEEEBBBBBBBBEEEEBBBBBBBBB????????????!
81 ???????????????BBBEHHHHHHEEEEEEEEEEEEEEEBBB?!!!!!!!!!???????
82 ?BBBBBBBEEEEEEEEEEBBBBBBBB???????!!!!!!???BBBBBBBBBBBBBBBBBB
83 BBBB???!!!!!!!!!!!!!!?????BBBBBBBBBBBBBBBBBEEEEEEEEBBBBBBEEE
84 EHHHHHHHEEEBBEEEEEEEEEBBBB???BEEEEEEEEEEEEEEEEEEEEEEEEB??BBB
85 BBB???????????????????!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
86 !BBBBBEEEEEEEEEEEEEEEEEEEE???????????BBBBBBBBBBBBBBBBBBB????
87 ??????????BEEEEEEEEEEEEEEEEBBBBBBBB?!!!!!!!!!!!!!!!!!!!!!!!!
88 !!!?????????BBBBBBBBBBBBBBBB?????????!!!!!!!!!!!!!!!!!!!!!!!
89 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!)))))))))))))))
90 ))))))))))!!???????????????BBBBBBBBBB????????????BBB????????
91 ?????????BBBBEBBBBBEEEEEEEEEEEHHHHHHKKHHHHHHEHHHHHHHHHHEEEEB
92 B????????B?BBEEEEHHHHHHHHHHHHHHHHHEEBB????!?????????????????
93 ?????????????BBBBBBBBBBBBBBBBBBBB?????!!?????????????BBBBBBB
94 BBBBEBBBBBBEEEEEEEEEEEEEEEEHKHHKNNNNNNNNNNNKKKKNNNNNNKKKHEEE
95 EEEEHHHHHHHHEEEEEBBBBBBBBB???!!!!!!??BBBBEEEEEEEEEEEEEEEEEEE
96 BB????!!!?????????????????????????!!!!!!????????????????????
97 ?????!!!!??????????????HHHKKKKKQQQNNNNNNNNNNNNNNHHHEEEEE????
98 ?????????????!!!!!!!!!!!!!!?????????EEEEEEHHHHHHHHHHEEEEEEEE
99 E????BB??????BBBBBBBBBBBBBBBBB????????!!!!!!!!!!!!!!!BBBBEEE
100 EEEEEEEEHHHHHHHHHHBBBB???????????!!!!!!!!!!!!???BBBBEEEEEEEH
101 HHHKKNNNNNKKKHHHHEEEEEEEBBBBBB???????????????????BBBB???????
102 ??????????????!!!!!!!!!!!!!!!!!????????????BBBBBBEEEEHHHEEEE
103 EEEEEEEEBBBEEEBBBB??????????????????!!!!!!!??BBBBBBBBBBBBEEE
104 EHHHHHKKHHEEEEHHKKKKKKHHHHEEEEEBBBBBBBB??!!!!!!!!!BBBBBBBBEE
105 HHHHHHHKKNNNNNNHHHHKKKKHHEEEEEEEBB???BBBEEEEBBBBBBBBBBBBBBBB
106 EEBBEBBBBBBBBBBBBBBBBBBBB????!!!!!!!!!!????????BBBBBBBBBBBEE
107 EEEEBBEEEHHHEEEEEEEEEEKHHHKNQQQNNNKKKKKKKKKKKKKEEEEEB??BBBBB
108 BBBBBBBBBBBBBBBB????!????BBEEEEEEEEEEEEEEEEEEEEEEEBB?BBBBBBE
109 EEEEEEEHHHHEEEEEEEBBBBBB????????!??????????BBBBBBBBEEEEEEEBB
110 EEEEEEEEBBBBBBBB?????????!!!!!!!!!!?BBBBBBBBBBBBBBEEEEEEEEEE
111 B??????????BBBB???????BBEEHHKKKKKKKKHHHHHHHHHHHEEBB??!!!!!!!
112 !!!!!!!!!!!!???????????????????????BB???????????????????????
113 !??????????????????????BBEBBBBBBBBBBBBBBBBBBBEEEBB??????????
114 ??????????!!!!!!