t/data/polymorphism.dat

   1 ID           M20132:(362)[c.+4G|A|T;c.+31C|A]; [E2|K|X;Q11|K]
   2 Feature      DNA; 1.1
   3 Feature        /label: point, transition
   4 Feature        /proof: computed
   5 Feature        /location: 4
   6 Feature        /upflank: gaagattcagccaagctcaaggatg
   7 Feature        /change: g|a
   8 Feature        /dnflank: aagtgcagttagggctgggaagggt
   9 Feature        /re_site: -BccI
  10 Feature      DNA; 1.2
  11 Feature        /label: point, transversion
  12 Feature        /proof: computed
  13 Feature        /location: 4
  14 Feature        /upflank: gaagattcagccaagctcaaggatg
  15 Feature        /change: g|t
  16 Feature        /dnflank: aagtgcagttagggctgggaagggt
  17 Feature        /re_site: -BccI
  18 Feature      RNA; 1.1
  19 Feature        /label: missense
  20 Feature        /proof: experimental
  21 Feature        /location: 4 (M20132::366)
  22 Feature        /upflank: gaagattcagccaagctcaaggatg
  23 Feature        /change: g|a
  24 Feature        /dnflank: aagtgcagttagggctgggaagggt
  25 Feature        /re_site: -BccI
  26 Feature        /codon_table: 1
  27 Feature        /codon: gaa|aaa; 1
  28 Feature        /region: coding
  29 Feature      RNA; 1.2
  30 Feature        /label: nonsense
  31 Feature        /proof: experimental
  32 Feature        /location: 4 (M20132::366)
  33 Feature        /upflank: gaagattcagccaagctcaaggatg
  34 Feature        /change: g|t
  35 Feature        /dnflank: aagtgcagttagggctgggaagggt
  36 Feature        /re_site: -BccI
  37 Feature        /codon_table: 1
  38 Feature        /codon: gaa|taa; 1
  39 Feature        /region: coding
  40 Feature      AA; 1.1
  41 Feature        /label: substitution, conservative
  42 Feature        /proof: computed
  43 Feature        /location: 2
  44 Feature        /change: E|K
  45 Feature      AA; 1.2
  46 Feature        /label: truncation
  47 Feature        /proof: computed
  48 Feature        /location: 2
  49 Feature        /change: E|*
  50 Feature      DNA; 2
  51 Feature        /label: point, transversion
  52 Feature        /proof: computed
  53 Feature        /location: 31
  54 Feature        /upflank: gaagattcagccaagctcaaggatg
  55 Feature        /change: c|a
  56 Feature        /dnflank: aagtgcagttagggctgggaagggt
  57 Feature        /re_site: -CviRI, -SfaNI
  58 Feature      RNA; 2
  59 Feature        /label: missense
  60 Feature        /proof: experimental
  61 Feature        /location: 31 (M20132::393)
  62 Feature        /upflank: gaagattcagccaagctcaaggatg
  63 Feature        /change: c|a
  64 Feature        /dnflank: aagtgcagttagggctgggaagggt
  65 Feature        /re_site: -CviRI, -SfaNI
  66 Feature        /codon_table: 1
  67 Feature        /codon: caa|aaa; 1
  68 Feature        /region: coding
  69 Feature      AA; 2
  70 Feature        /label: substitution, conservative
  71 Feature        /proof: computed
  72 Feature        /location: 11
  73 Feature        /change: Q|K
  74 //