A test to ensure Bio::PrimarySeqI->trunc() doesn't use clone() for a Bio::Seq::RichSe...
[bioperl-live.git] / t / data / dmel_2Lchunk.gb
blobbfe45266a64841fa419ce6683bc969b84bef1089
1 LOCUS       2L:14000-19000          5001 bp    dna     linear   UNK 
2 DEFINITION  THIS IS TEST DATA FOR THE UNFLATTENER - ERRONEOUS CDS RECORDS
3 ACCESSION   unknown
4 KEYWORDS    .
5 SOURCE      fruit fly
6   ORGANISM  Drosophila melanogaster
7             Eukaryota; Metazoa; Arthropoda; Insecta; Pterygota; Neoptera;
8             Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
9             Drosophilidae; Drosophila.
10 FEATURES             Location/Qualifiers
11      source          1..5001
12                      /location="14000..19000"
13                      /chromosome="2L"
14                      /type="tile"
15                      /organism="Drosophila melanogaster"
16                      /mol_type="genomic dna"
17                      /md5checksum="d53c791f329d9bb3953522c37087626e"
18      gene            complement(-4163..7373)
19                      /gene="l(2)gl"
20                      /comment="person=bmatthew; date=Tue May 14 09:00:55 PDT
21                      2002; text=Only one EST supports this alternative
22                      transcript"
23                      /dbxref="GO:0007391"
24                      /dbxref="GO:0005918"
25                      /dbxref="GO:0016082"
26                      /dbxref="GO:0005938"
27                      /dbxref="GO:0005578"
28                      /dbxref="GO:0017022"
29                      /dbxref="GO:0016327"
30                      /dbxref="GO:0045200"
31                      /dbxref="GO:0007559"
32                      /dbxref="GO:0008021"
33                      /dbxref="GO:0030154"
34                      /dbxref="GO:0007179"
35                      /dbxref="GO:0005856"
36                      /dbxref="GO:0002009"
37                      /dbxref="GO:0045184"
38                      /dbxref="GO:0005737"
39                      /dbxref="GO:0007269"
40                      /dbxref="GO:0008360"
41                      /dbxref="FlyBase:FBgn0002121"
42                      /dbxref="GO:0019991"
43                      /dbxref="GO:0016336"
44                      /dbxref="GO:0016335"
45                      /dbxref="GO:0016334"
46                      /dbxref="GO:0016333"
47                      /dbxref="flybase:FBan0002671"
48                      /dbxref="GO:0016332"
49                      /dbxref="GO:0005829"
50                      /dbxref="GO:0008283"
51                      /dbxref="GO:0045159"
52                      /dbxref="GO:0007399"
53                      /dbxref="GO:0005614"
54                      /dbxref="GO:0005886"
55                      /dbxref="GO:0045197"
56                      /dbxref="GO:0045175"
57                      /dbxref="GO:0045196"
58                      /dbxref="GO:0042127"
59                      /gbunit="AE003590"
60                      /sp_status="Perfect match to SwissProt real
61                      (computational)"
62                      /cyto_range="21A2-21A2"
63                      /standard_name="CG2671"
64      mRNA            complement(-4163..7373)
65                      /gene="l(2)gl"
66                      /standard_name="CG2671-RB"
67                      /product_desc="CG2671-RB transcript from_gene[CG2671
68                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5154
69                      transcript_boundaries:(2L:9,836..21,372[-])
70                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
71                      FBgn0002121 (0 ""reduction of virulence"")]"
72      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
73                      -1713..-1071,-479..-374,-316..875,934..1712,5886..5945))
74                      /translation="MLKFIRGKGQQPSADRQRYITAQHGFPHKPSALAYDPVLKLMAI
75                      GTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWE
76                      PVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIY
77                      HDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESASVQRAYIAP
78                      GHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYK
79                      GKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVTFENNRDVA
80                      EVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAG
81                      DEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLK
82                      PIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIA
83                      FCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGHDQLNVRSN
84                      LLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVLFDFKNFVP
85                      VFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEARP
86                      VERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSATNASTVSVFLLHLPPAQ
87                      TAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQLNAGEN
88                      GSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETLQS
89                      MHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKR
90                      QLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVVQPTGVVPVEPLE
91                      NEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNSVQQVNGVN
92                      ISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKAS
93                      TTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGDNKIGTPKT
94                      APEESQF"
95                      /status="all done"
96                      /gene="l(2)gl"
97                      /product="CG2671-PB"
98                      /sp_comment="Imperfect match to REAL SP with
99                      corresponding FBgn"
100                      /author="bmatthew"
101                      /date="Tue May 14 09:05:05 PDT 2002"
102                      /protein_id="AAG22256"
103                      /codon_start=5943
104                      /timestamp="1021392305000"
105                      /standard_name="CG2671-RB"
106                      /product_desc="CG2671-PB translation from_gene[CG2671
107                      l(2)gl FBgn0002121] seq_release:3  mol_weight=125897
108                      cds_boundaries:(2L:11218..19944[-])  aa_length:1153
109                      transcript_info:[CG2671-RB  seq_release:3]
110                      gene_info:[gene symbol:l(2)gl FBgn0002121
111                      gene_boundaries:(2L:9836..21372[-])  (0 ""reduction of
112                      virulence"")]"
113      mRNA            complement(-4163..7373)
114                      /gene="l(2)gl"
115                      /standard_name="CG2671-RD"
116                      /product_desc="CG2671-RD transcript from_gene[CG2671
117                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5229
118                      transcript_boundaries:(2L:9,836..21,372[-])
119                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
120                      FBgn0002121 (0 ""reduction of virulence"")]"
121      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
122                      -1713..-1071,-479..-374,-316..875,934..1649))
123                      /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG
124                      TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN
125                      IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC
126                      VLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVN
127                      YVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFT
128                      SKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNY
129                      LASEVVQSVYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTG
130                      HEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSG
131                      LFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSD
132                      RDGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVS
133                      GGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRS
134                      TRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSA
135                      TNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGIS
136                      IFDQAGSPVDQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRR
137                      IHFGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALIC
138                      LTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALA
139                      TSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRP
140                      AEENVGRNSVQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTE
141                      ETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITN
142                      ISHEKTNGDNKIGTPKTAPEESQF"
143                      /status="all done"
144                      /gene="l(2)gl"
145                      /product="CG2671-PD"
146                      /sp_comment="Imperfect match to REAL SP with
147                      corresponding FBgn"
148                      /author="bmatthew"
149                      /date="Tue May 14 09:06:14 PDT 2002"
150                      /protein_id="AAN10501"
151                      /codon_start=1647
152                      /timestamp="1021392374000"
153                      /standard_name="CG2671-RD"
154                      /product_desc="CG2671-PD translation from_gene[CG2671
155                      l(2)gl FBgn0002121] seq_release:3  mol_weight=121250
156                      cds_boundaries:(2L:11218..15648[-])  aa_length:1112
157                      transcript_info:[CG2671-RD  seq_release:3]
158                      gene_info:[gene symbol:l(2)gl FBgn0002121
159                      gene_boundaries:(2L:9836..21372[-])  (0 ""reduction of
160                      virulence"")]"
161      mRNA            complement(-4163..7373)
162                      /gene="l(2)gl"
163                      /standard_name="CG2671-RE"
164                      /product_desc="CG2671-RE transcript from_gene[CG2671
165                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5224
166                      transcript_boundaries:(2L:9,836..21,372[-])
167                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
168                      FBgn0002121 (0 ""reduction of virulence"")]"
169      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
170                      -1713..-1071,-479..-374,-316..875,934..1649))
171                      /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG
172                      TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN
173                      IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC
174                      VLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVN
175                      YVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFT
176                      SKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNY
177                      LASEVVQSVYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTG
178                      HEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSG
179                      LFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSD
180                      RDGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVS
181                      GGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRS
182                      TRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSA
183                      TNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGIS
184                      IFDQAGSPVDQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRR
185                      IHFGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALIC
186                      LTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALA
187                      TSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRP
188                      AEENVGRNSVQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTE
189                      ETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITN
190                      ISHEKTNGDNKIGTPKTAPEESQF"
191                      /status="all done"
192                      /gene="l(2)gl"
193                      /product="CG2671-PE"
194                      /sp_comment="Imperfect match to REAL SP with
195                      corresponding FBgn"
196                      /author="bmatthew"
197                      /date="Tue May 14 09:02:48 PDT 2002"
198                      /protein_id="AAN10502"
199                      /codon_start=1647
200                      /timestamp="1021392168000"
201                      /standard_name="CG2671-RE"
202                      /product_desc="CG2671-PE translation from_gene[CG2671
203                      l(2)gl FBgn0002121] seq_release:3  mol_weight=121250
204                      cds_boundaries:(2L:11218..15648[-])  aa_length:1112
205                      transcript_info:[CG2671-RE  seq_release:3]
206                      gene_info:[gene symbol:l(2)gl FBgn0002121
207                      gene_boundaries:(2L:9836..21372[-])  (0 ""reduction of
208                      virulence"")]"
209      mRNA            complement(-4163..7373)
210                      /gene="l(2)gl"
211                      /standard_name="CG2671-RF"
212                      /product_desc="CG2671-RF transcript from_gene[CG2671
213                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5081
214                      transcript_boundaries:(2L:9,836..21,372[-])
215                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
216                      FBgn0002121 (0 ""reduction of virulence"")]"
217      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
218                      -1713..-1071,-479..-374,-316..875,934..1649))
219                      /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG
220                      TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN
221                      IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC
222                      VLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVN
223                      YVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFT
224                      SKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNY
225                      LASEVVQSVYESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTG
226                      HEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSG
227                      LFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSD
228                      RDGFVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVS
229                      GGTAHGLVLFDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRS
230                      TRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSA
231                      TNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGIS
232                      IFDQAGSPVDQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRR
233                      IHFGSFSCRISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALIC
234                      LTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALA
235                      TSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRP
236                      AEENVGRNSVQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTE
237                      ETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITN
238                      ISHEKTNGDNKIGTPKTAPEESQF"
239                      /status="all done"
240                      /gene="l(2)gl"
241                      /product="CG2671-PF"
242                      /sp_comment="Imperfect match to REAL SP with
243                      corresponding FBgn"
244                      /author="bmatthew"
245                      /date="Tue May 14 09:02:52 PDT 2002"
246                      /protein_id="AAN10503"
247                      /codon_start=1647
248                      /timestamp="1021392172000"
249                      /standard_name="CG2671-RF"
250                      /product_desc="CG2671-PF translation from_gene[CG2671
251                      l(2)gl FBgn0002121] seq_release:3  mol_weight=121250
252                      cds_boundaries:(2L:11218..15648[-])  aa_length:1112
253                      transcript_info:[CG2671-RF  seq_release:3]
254                      gene_info:[gene symbol:l(2)gl FBgn0002121
255                      gene_boundaries:(2L:9836..21372[-])  (0 ""reduction of
256                      virulence"")]"
257      mRNA            complement(-4163..4584)
258                      /gene="l(2)gl"
259                      /standard_name="CG2671-RC"
260                      /product_desc="CG2671-RC transcript from_gene[CG2671
261                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5264
262                      transcript_boundaries:(2L:9,836..18,583[-])
263                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
264                      FBgn0002121 (0 ""reduction of virulence"")]"
265      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
266                      -1713..-1071,-479..-374,-316..875,934..1712,3054..3137))
267                      /translation="MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYD
268                      PVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTA
269                      ANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF
270                      TIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESAS
271                      VQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPC
272                      KSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVT
273                      FENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSV
274                      YESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFW
275                      DCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDP
276                      RLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGH
277                      DQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVL
278                      FDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQV
279                      PTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSATNASTVSVF
280                      LLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPV
281                      DQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCR
282                      ISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTNMGDIMV
283                      LSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVVQPTG
284                      VVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNS
285                      VQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVL
286                      STQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGD
287                      NKIGTPKTAPEESQF"
288                      /status="all done"
289                      /gene="l(2)gl"
290                      /product="CG2671-PC"
291                      /sp_comment="Perfect match to REAL SP with corresponding
292                      FBgn"
293                      /author="bmatthew"
294                      /date="Tue May 14 09:02:56 PDT 2002"
295                      /protein_id="AAF51570"
296                      /codon_start=3135
297                      /timestamp="1021392176000"
298                      /standard_name="CG2671-RC"
299                      /product_desc="CG2671-PC translation from_gene[CG2671
300                      l(2)gl FBgn0002121] seq_release:3  mol_weight=126893
301                      cds_boundaries:(2L:11218..17136[-])  aa_length:1161
302                      transcript_info:[CG2671-RC  seq_release:3]
303                      gene_info:[gene symbol:l(2)gl FBgn0002121
304                      gene_boundaries:(2L:9836..21372[-])  (0 ""reduction of
305                      virulence"")]"
306      mRNA            complement(-4163..4584)
307                      /gene="l(2)gl"
308                      /standard_name="CG2671-RA"
309                      /product_desc="CG2671-RA transcript from_gene[CG2671
310                      l(2)gl FBgn0002121] seq_release:3 mRNA_length:5407
311                      transcript_boundaries:(2L:9,836..18,583[-])
312                      cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl
313                      FBgn0002121 (0 ""reduction of virulence"")]"
314      CDS             complement(join(-2781..-2655,-2589..-2481,-2220..-1778,
315                      -1713..-1071,-479..-374,-316..875,934..1712,3054..3137))
316                      /translation="MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYD
317                      PVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTA
318                      ANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF
319                      TIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESAS
320                      VQRAYIAPGHGQSVGLTVNFEGSEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPC
321                      KSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKVCLDFTSKVIDFFVT
322                      FENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSV
323                      YESILRAGDEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFW
324                      DCTGVLLKPIYNFKTSSIFGSESDFRDDAAADMSAEQVDEGEPPFRKSGLFDPYSDDP
325                      RLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDGFVWKGH
326                      DQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVL
327                      FDFKNFVPVFHRCTLNPNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQV
328                      PTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTNVNITSPTLWSATNASTVSVF
329                      LLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPV
330                      DQLNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCR
331                      ISPETLQSMHGCSPTKSTRSHGDGEADPNISGSLAVSRGDVYNETALICLTNMGDIMV
332                      LSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRIALATSRVVQPTG
333                      VVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNS
334                      VQQVNGVNISNSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVL
335                      STQTNKASTTVNMSEIPNINISNLEDLESKRNTTETSTSSVVIKSIITNISHEKTNGD
336                      NKIGTPKTAPEESQF"
337                      /status="all done"
338                      /gene="l(2)gl"
339                      /product="CG2671-PA"
340                      /sp_comment="Perfect match to REAL SP with corresponding
341                      FBgn"
342                      /comment="person=bmatthew; date=Tue May 14 08:53:50 PDT
343                      2002; text=Only one EST supports this alternative
344                      transcript"
345                      /author="bmatthew"
346                      /date="Tue May 14 09:03:00 PDT 2002"
347                      /protein_id="AAG22255"
348                      /codon_start=3135
349                      /timestamp="1021392180000"
350                      /standard_name="CG2671-RA"
351                      /product_desc="CG2671-PA translation from_gene[CG2671
352                      l(2)gl FBgn0002121]seq_release:3  mol_weight=126893
353                      cds_boundaries:(2L:11218..17136[-])  aa_length:1161
354                      transcript_info:[CG2671-RA  seq_release:3]
355                      gene_info:[gene symbol:l(2)gl FBgn0002121
356                      gene_boundaries:(2L:9836..21372[-]) (0 ""reduction of
357                      virulence"")]"
358 BASE COUNT     1613 a    930 c    879 g   1579 t
359 ORIGIN
360         1 cttctccgtc taataagttc gatcgcacgt ttaactgatc gtgacccttc cacacaaatc
361        61 catcacgatc gctgaccaaa ttcattgaaa tgtattttaa agacactttt tcgggtaagt
362       121 ctatgaagtc ggctataact atttggcccg ctgtgccacc aacaataagt tgtccggttt
363       181 ttgggcagaa tgctattttc ttcactgcta aacgagggtc atctgaataa ggatcaaaaa
364       241 gtcctgattt ccgaaatggc ggttctcctt catcgacttg ttccgcactc atatctgcag
365       301 ctgcgtcatc tcggaagtct gactcacttc caaaaatgct gctagtttta aaattataaa
366       361 ttggtttaag caacactcca gtgcagtccc aaaatttaac agaaccatct tcgtgaccag
367       421 ttaacaaaat ctcataaagc ttagtcgcgt cctcttctac agattcttct aagttatccg
368       481 ggagagtacc gccagtgata ggccagctaa tattgctata gtcaatgtct tgttcatctc
369       541 cagctcttaa aatactttca tataccgact gtacgacttc agaagcaagg taattgcaag
370       601 tgacagctga tgcatggaca gagtgaagat atggcgcttt gatagcacaa atattagggt
371       661 cagtaagatc gtaagcgcag agttcctctt caagtagtac aacaagaact tcagcgacat
372       721 ctctattatt ttcaaaggtc acaaaaaagt caatcacttt agacgtaaag tcaagacaca
373       781 ctttgtgtcc atcgctggcg tgaacggaca cacaattgtg atcaccatat gctgaccgtg
374       841 gcatgccgcc ggaaaaaaca attacatcgt tggatctaaa agaacgagaa attagtacac
375       901 atctaaaaaa ctttgtgttt aagttatatt aaccttcgct tgcctttgta cagtcgattt
376       961 atgcttttgc atggatcagg tccataaggc acataattaa cattcgacgg cggttctggg
377      1021 ttatctatgc tccaagtggc gtatgaacca tcagcgtggt accaggtaaa ttcagatcct
378      1081 tcgaagttca ctgtaagacc aacgctctgt ccatgtccag gggctatgta tgctcgctgg
379      1141 acagatgcgc tttcaaaatc ccacaaaaca caaaggccgc gattgtatgc aactagaagt
380      1201 ttgctagggg agtttggaag ttggcggatt gactcaattg caccaggatt tagcttgtag
381      1261 gctggtggca cctgctctag cacaacgtca tggtaaatta caggctcctt aatggtaaat
382      1321 gtatgtaaat ccagttgata gatgtttcca ccttctgttc caatccatag cagatcctta
383      1381 ctgagagaac agcacagcga tgaaactttt ttaagtttgc cgtcaaacgg tagtgttttg
384      1441 attggcagca acgttgctcc aactggctcc catagaatta attgattcgc tgccgtcaac
385      1501 gaaagtatgc gaccagttcc atacacccat tcaagtaatt gtacattaag ctccgatgct
386      1561 gaattgttta acaaagtatg ctgaccgtac aattcaactc cgggttgacc gaaaactttt
387      1621 aaagcccctg tttgcgtccc tattgccata agtttcaaaa ctggatcata cgcaagagcc
388      1681 gaaggcttat gaggaaagcc atgctgtgcc gtctaaaaga aaaaaatatt aaaaagtttc
389      1741 aaaaagcaat tacagattct taataattca aaattgtttg gttcatttct taattgtaaa
390      1801 agggttttcc aaaacattct agttttttca gttcccaaga tctggtaaat cgtcagatta
391      1861 cttgccactt tatagagtcg ggaacgcttt cttaaaccat ttacatactt ttaccgaatc
392      1921 taatacagca tttttcttta caattaacgg gaataaaaac ctcaataaat attgaggttt
393      1981 gaatttaaat taagttcaaa aagcgcccaa agctttaaat gctgctctta agtatgtctc
394      2041 ttataaacat cactgtagac agcagtccct actatcatac tatatttaca ttgatcgaaa
395      2101 aaaggtttgg taaatcttat ctaattgtat aaattgtatt tttatacaaa aaaagtttta
396      2161 agaagttgct atcagatctc gttatgagtt gattttgttt gattcatatt gcaggtgtat
397      2221 ttggatttct aacgcagtta caggcgaata aattcttttt cttttgactt taaaatctta
398      2281 tcaattttac gccgtctatg acatacttat tttgtgcctg aaataagggt gtttgtgaaa
399      2341 ccaagccatt tacccaaccc attaagcaca taaaagcaat cttatcagct cccccctctt
400      2401 tctggagctg gatggcgatt acctctgacc tacttttatt tgtttaataa catgtttata
401      2461 ctaacatggg ataaaaaaaa ttcttataaa atttcatata cgtatattta ttaaactatt
402      2521 atggtaatag ggaaacatct atggtatatt taattcgaaa atatttaaaa ggaatggaca
403      2581 acattacgag cacaacgata taatagaatt tttaaagtag ccaaaaacag gcggtggaaa
404      2641 aagacactca caaaatcaac aaagcttcag gtacctcctc atatttggca ccgcatagaa
405      2701 ggagtgcaca aaagaaacga gcaaaaaagc accgtaacct tttttatgcg gtgctttgtg
406      2761 gcgcgagtct acaaaatact gtgtgtgtat gcggtttact tgtagttgcg gtggaaaaaa
407      2821 tttacctaaa tgttaatgcc caaaagtatg cacataggag aagacataac aaaagattga
408      2881 aaaggaggta tttatttatt cttaataaat tataagcttt cttctaactt ccataaaaat
409      2941 gtatttacca cccaggatca aaataaatga caccccacaa aatataccaa tcggctacat
410      3001 atacgaaaaa aaaaaaataa aatagaatgg aaagagaaaa ttgtttgttg taccttacga
411      3061 taagcaaaaa ggtccttctg taggcggtgt ctgtcagcac tgggctgctg cccttttcct
412      3121 ctgataaact ttaacataat tggttatgct cttgtggtgg gttggtttcg atgaataaat
413      3181 atgtatacta attgtggccg tatttattct aaactgaaaa taataaataa aaattaatca
414      3241 cattttcaat aagtaaaaaa ttaaaaagga acttgtatat tttttcactc ttatgaataa
415      3301 aaccgagaaa ttaaatttag gtaatactat taataccttt tatagatacg gacgatacgt
416      3361 ttaatattat tctggtatac tttaatcaaa atttgtttaa caaaaagggt tttacattct
417      3421 tggtcatagg aaattcagtg gacagataga tcttggctcc caagattttc caaactagtt
418      3481 gtgcttattt tcttaaaact tcaaagattt gcatgtaggc agtttaataa acatgtttgt
419      3541 acatatgtat atgtacatta ggaaaaatga gatgcaagat gagcgatctg tactctttgc
420      3601 aatgtgtatg tatgtacata tgtacctccc tttaatgaac tagcaattcc gtcacgcaca
421      3661 cgaaatattt ttttatttgt aaatcttttt ttaagtttgt ttaaacaatt tagttactat
422      3721 taaagctctg aaattcataa ataaataata ataaatgtat taattatgac aaaaaacaac
423      3781 ttaaaacata tacgtttatt tttgtaaaag cgttttaggc aaacgctagc tggtcggtac
424      3841 taatattttt tcgaagactg tataccgtat acatacattt atgtacgtag gtatgtatcc
425      3901 gtgagtaagc tgaggtgcaa aaccgtatca ccatttgctt ttcggctgat aaccaatacc
426      3961 aagtaagtca actgtttccc aaatgtatct gcataacaag gtgatgacct aattttgagt
427      4021 acataccgat ctttacagtt gaccagcttt gcgattgcat accggtatct gtttattcac
428      4081 atatacacac acaaattgcg tgttagacag acagcaaaat gacgactgtt aactgttggc
429      4141 gtggctgact caccgactac gcctctatgc taagaacata catatttgtg gacactttat
430      4201 ttaagaagtt tgaaatataa atcaattgcc taatcagtaa tactgttgtt gagcccttta
431      4261 cctttatgta tttccgtttg tacggttaag gcggtggccg agtaattttt tgaactattt
432      4321 tatttgctca ccaacacgca taagtttgta tgtattctta tgttgagaaa cgcccgcact
433      4381 gttcttcaca tcgttgcttt aaatgagaat aaatgaaata aacgtgtcaa ccaagaacac
434      4441 acagataata atacgaccgg tcagagctta accgtgtatc tgttttataa aacgtgaaca
435      4501 atattattag cccaaaacga tatgcgcgtc attttaacac acacaaagtc gcgatcggtg
436      4561 ggtctagtgt gcccgtgtat ctctatcgaa aaaatcatat attttttaga aggtatattt
437      4621 tccatgactg actggaatgg gtggagaaca tcgctttggg agtgaaactc cgctataaat
438      4681 tgtcatttgt ttttatagca acctttttga tatggtcgcc aacttttata taattataat
439      4741 aataattttt gtaattaatc accgctgtcg cacgaaaaat ttaggaaatg tgccaacgag
440      4801 cggaattttt cggaacgatc gatgttttac cataacctgc tatataaatt gtgaaccaca
441      4861 ttttcaacac aaaactagat gtgcttcatt tataacgcaa tgtcgtgatt ttgtgggcag
442      4921 tgtgaccatg tccaatctgc gttcaagtaa aaccatattt agtgacacaa actttccatt
443      4981 acaaaatacc aaacaacttt a