| blob | 9b0e39d7d0ba2687c6c1d8979adf6975e42a06c8 |
1 BioPerl Dependencies
3 NOTE : This file was auto-generated by the helper script
4 maintenance/dependencies.pl. Do not edit directly!
6 The following packages are used by BioPerl. While not all are required for
7 BioPerl to operate properly, some functionality will be missing without them.
8 You can easily choose to install all of these during the normal installation
9 process. Note that the PPM version of the BioPerl packages always tries to
10 install all dependencies.
12 The DBD::mysql, DB_File and XML::Parser modules require other applications or
13 databases: MySQL, Berkeley DB, and expat respectively.
15 NB: This list of packages is not authoritative. See the 'requires',
16 'build_requires' and 'recommends' sections of Build.PL instead.
18 ==============================================================================
19 | Distribution | Module used - Description | Min. ver. |
20 |---------------------------+--------------------------------------+-----------|
21 | AcePerl | * Ace - Interface to ACEDB (Popular | None |
22 | | Genome DB) | |
23 | | * Ace::Sequence::Homol - NA | |
24 |==============================================================================|
25 | Used by: |
26 |------------------------------------------------------------------------------|
27 | * Bio::DB::Ace - Ace |
28 | * Bio::DB::GFF::Adaptor::ace - Ace |
29 | * Bio::DB::GFF::Adaptor::dbi::mysqlace - Ace::Sequence::Homol |
30 | * Bio::DB::GFF::Adaptor::dbi::oracleace - Ace::Sequence::Homol |
31 ==============================================================================
32 ==============================================================================
33 | Distribution | Module used - Description | Min. ver. |
34 |---------------------------+--------------------------------------+-----------|
35 | Algorithm-Munkres | * Algorithm::Munkres - Solution to | None |
36 | | classical Assignment Problem | |
37 |==============================================================================|
38 | Used by: |
39 |------------------------------------------------------------------------------|
40 | * Bio::PhyloNetwork - Algorithm::Munkres |
41 ==============================================================================
42 ==============================================================================
43 | Distribution | Module used - Description | Min. ver. |
44 |---------------------------+--------------------------------------+-----------|
45 | Archive-Tar | * Archive::Tar - Read, write and | None |
46 | | manipulate tar files | |
47 |==============================================================================|
48 | Used by: |
49 |------------------------------------------------------------------------------|
50 | * Bio::Root::Build - Archive::Tar |
51 ==============================================================================
52 ==============================================================================
53 | Distribution | Module used - Description | Min. ver. |
54 |---------------------------+--------------------------------------+-----------|
55 | Array-Compare | * Array::Compare - Class to compare | None |
56 | | two arrays | |
57 |==============================================================================|
58 | Used by: |
59 |------------------------------------------------------------------------------|
60 | * Bio::PhyloNetwork - Array::Compare |
61 ==============================================================================
62 ==============================================================================
63 | Distribution | Module used - Description | Min. ver. |
64 |---------------------------+--------------------------------------+-----------|
65 | Bio-ASN1-EntrezGene | * Bio::ASN1::EntrezGene - Parser | None |
66 | | for NCBI Entrez Gene (ASN.1- | |
67 | | format) | |
68 |==============================================================================|
69 | Used by: |
70 |------------------------------------------------------------------------------|
71 | * Bio::SeqIO::entrezgene - Bio::ASN1::EntrezGene |
72 ==============================================================================
73 ==============================================================================
74 | Distribution | Module used - Description | Min. ver. |
75 |---------------------------+--------------------------------------+-----------|
76 | Compress-Zlib | * Compress::Zlib - Interface to | None |
77 | | zlib compression library | |
78 |==============================================================================|
79 | Used by: |
80 |------------------------------------------------------------------------------|
81 | * Bio::DB::SeqFeature::Store - Compress::Zlib |
82 ==============================================================================
83 ==============================================================================
84 | Distribution | Module used - Description | Min. ver. |
85 |---------------------------+--------------------------------------+-----------|
86 | Convert-Binary-C | * Convert::Binary::C - Binary Data | None |
87 | | Conversion using C Types | |
88 |==============================================================================|
89 | Used by: |
90 |------------------------------------------------------------------------------|
91 | * Bio::SeqIO::strider - Convert::Binary::C |
92 ==============================================================================
93 ==============================================================================
94 | Distribution | Module used - Description | Min. ver. |
95 |---------------------------+--------------------------------------+-----------|
96 | DBI | * DBI - Generic Database Interface | None |
97 | | (see DBD modules) | |
98 |==============================================================================|
99 | Used by: |
100 |------------------------------------------------------------------------------|
101 | * Bio::DB::GFF::Adaptor::dbi - DBI |
102 | * Bio::DB::GFF::Adaptor::dbi::caching_handle - DBI |
103 | * Bio::DB::SeqFeature::Store::DBI::mysql - DBI |
104 | * Bio::DB::SeqFeature::Store::DBI::Pg - DBI |
105 ==============================================================================
106 ==============================================================================
107 | Distribution | Module used - Description | Min. ver. |
108 |---------------------------+--------------------------------------+-----------|
109 | Data-Stag | * Data::Stag - NA | None |
110 | | * Data::Stag::XMLWriter - NA | |
111 |==============================================================================|
112 | Used by: |
113 |------------------------------------------------------------------------------|
114 | * Bio::Annotation::TagTree - Data::Stag |
115 | * Bio::SeqIO::chaosxml - Data::Stag::XMLWriter |
116 ==============================================================================
117 ==============================================================================
118 | Distribution | Module used - Description | Min. ver. |
119 |---------------------------+--------------------------------------+-----------|
120 | Graph | * Graph::Directed - NA | None |
121 | | * Graph::Undirected - NA | None |
122 |==============================================================================|
123 | Used by: |
124 |------------------------------------------------------------------------------|
125 | * Bio::PhyloNetwork - Graph::Directed |
126 | * Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph::Directed |
127 | * Bio::Assembly::Tools::ContigSpectrum - Graph::Undirected |
128 ==============================================================================
129 ==============================================================================
130 | Distribution | Module used - Description | Min. ver. |
131 |---------------------------+--------------------------------------+-----------|
132 | HTML-Parser | * HTML::HeadParser - Parse <HEAD> | None |
133 | | section of HTML documents | |
134 |==============================================================================|
135 | Used by: |
136 |------------------------------------------------------------------------------|
137 | * Bio::Tools::Analysis::DNA::ESEfinder - HTML::HeadParser |
138 | * Bio::Tools::Analysis::Protein::ELM - HTML::HeadParser |
139 ==============================================================================
140 ==============================================================================
141 | Distribution | Module used - Description | Min. ver. |
142 |---------------------------+--------------------------------------+-----------|
143 | IO-String | * IO::String - IO::File interface | None |
144 | | for in-core strings | |
145 |==============================================================================|
146 | Used by: |
147 |------------------------------------------------------------------------------|
148 | * Bio::PhyloNetwork - IO::String |
149 | * Bio::DB::CUTG - IO::String |
150 | * Bio::DB::SeqHound - IO::String |
151 | * Bio::DB::WebDBSeqI - IO::String |
152 | * Bio::Index::Blast - IO::String |
153 | * Bio::Index::BlastTable - IO::String |
154 | * Bio::Index::Hmmer - IO::String |
155 | * Bio::SearchIO::Writer::BSMLResultWriter - IO::String |
156 | * Bio::SeqIO::game::gameWriter - IO::String |
157 | * Bio::Tools::Analysis::DNA::ESEfinder - IO::String |
158 | * Bio::Tools::Analysis::Protein::Domcut - IO::String |
159 | * Bio::Tools::Analysis::Protein::ELM - IO::String |
160 | * Bio::Tools::Analysis::Protein::GOR4 - IO::String |
161 | * Bio::Tools::Analysis::Protein::HNN - IO::String |
162 | * Bio::Tools::Analysis::Protein::Mitoprot - IO::String |
163 | * Bio::Tools::Analysis::Protein::NetPhos - IO::String |
164 | * Bio::Tools::Analysis::Protein::Scansite - IO::String |
165 | * Bio::Tools::Analysis::Protein::Sopma - IO::String |
166 | * Bio::Tools::Phylo::Molphy - IO::String |
167 | * Bio::Tools::Phylo::PAML - IO::String |
168 | * Bio::Tools::Run::RemoteBlast - IO::String |
169 | * Bio::TreeIO::cluster - IO::String |
170 | * Bio::TreeIO::nexus - IO::String |
171 | * Bio::Variation::IO::xml - IO::String |
172 ==============================================================================
173 ==============================================================================
174 | Distribution | Module used - Description | Min. ver. |
175 |---------------------------+--------------------------------------+-----------|
176 | Math-Random | * Math::Random - Random Number | None |
177 | | Generators | |
178 |==============================================================================|
179 | Used by: |
180 |------------------------------------------------------------------------------|
181 | * Bio::PhyloNetwork::RandomFactory - Math::Random |
182 ==============================================================================
183 ==============================================================================
184 | Distribution | Module used - Description | Min. ver. |
185 |---------------------------+--------------------------------------+-----------|
186 | Memoize | * Memoize - Automatically cache | None |
187 | | results of functions | |
188 |==============================================================================|
189 | Used by: |
190 |------------------------------------------------------------------------------|
191 | * Bio::DB::SeqFeature::Store::DBI::mysql - Memoize |
192 | * Bio::DB::SeqFeature::Store::DBI::Pg - Memoize |
193 ==============================================================================
194 ==============================================================================
195 | Distribution | Module used - Description | Min. ver. |
196 |---------------------------+--------------------------------------+-----------|
197 | Module-Build | * Module::Build - Build, test, and | 0.2805 |
198 | | install Perl modules | |
199 | | * Module::Build::PPMMaker - NA | |
200 |==============================================================================|
201 | Used by: |
202 |------------------------------------------------------------------------------|
203 | * Bio::Root::Build - Module::Build |
204 | * Bio::Root::Test - Module::Build |
205 | * Bio::Root::Build - Module::Build::PPMMaker |
206 ==============================================================================
207 ==============================================================================
208 | Distribution | Module used - Description | Min. ver. |
209 |---------------------------+--------------------------------------+-----------|
210 | PostScript | * PostScript::TextBlock - Objects | None |
211 | | used by PS::Document | |
212 |==============================================================================|
213 | Used by: |
214 |------------------------------------------------------------------------------|
215 | * Bio::Tree::Draw::Cladogram - PostScript::TextBlock |
216 ==============================================================================
217 ==============================================================================
218 | Distribution | Module used - Description | Min. ver. |
219 |---------------------------+--------------------------------------+-----------|
220 | SVG | * SVG - Generate SVG images and | 2.26 |
221 | | files | |
222 |==============================================================================|
223 | Used by: |
224 |------------------------------------------------------------------------------|
225 | * Bio::Draw::Pictogram - SVG |
226 ==============================================================================
227 ==============================================================================
228 | Distribution | Module used - Description | Min. ver. |
229 |---------------------------+--------------------------------------+-----------|
230 | SVG-Graph | * SVG::Graph - Series of Modules to | None |
231 | | produce SVG graphs | |
232 | | * SVG::Graph::Data - NA | |
233 | | * SVG::Graph::Data::Node - NA | |
234 | | * SVG::Graph::Data::Tree - NA | |
235 |==============================================================================|
236 | Used by: |
237 |------------------------------------------------------------------------------|
238 | * Bio::TreeIO::svggraph - SVG::Graph |
239 | * Bio::TreeIO::svggraph - SVG::Graph::Data |
240 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Node |
241 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Tree |
242 ==============================================================================
243 ==============================================================================
244 | Distribution | Module used - Description | Min. ver. |
245 |---------------------------+--------------------------------------+-----------|
246 | Set-Scalar | * Set::Scalar - Set of scalars (inc | None |
247 | | references) | |
248 |==============================================================================|
249 | Used by: |
250 |------------------------------------------------------------------------------|
251 | * Bio::Tree::Compatible - Set::Scalar |
252 ==============================================================================
253 ==============================================================================
254 | Distribution | Module used - Description | Min. ver. |
255 |---------------------------+--------------------------------------+-----------|
256 | Spreadsheet-ParseExcel | * Spreadsheet::ParseExcel - Get | None |
257 | | information from Excel file | |
258 |==============================================================================|
259 | Used by: |
260 |------------------------------------------------------------------------------|
261 | * Bio::Microarray::Tools::MitoChipV2Parser - Spreadsheet::ParseExcel |
262 | * Bio::Microarray::Tools::ReseqChip - Spreadsheet::ParseExcel |
263 | * Bio::SeqIO::excel - Spreadsheet::ParseExcel |
264 ==============================================================================
265 ==============================================================================
266 | Distribution | Module used - Description | Min. ver. |
267 |---------------------------+--------------------------------------+-----------|
268 | Spreadsheet-WriteExcel | * Spreadsheet::WriteExcel - Write | None |
269 | | cross-platform Excel binary file. | |
270 |==============================================================================|
271 | Used by: |
272 |------------------------------------------------------------------------------|
273 | * Bio::Microarray::Tools::ReseqChip - Spreadsheet::WriteExcel |
274 ==============================================================================
275 ==============================================================================
276 | Distribution | Module used - Description | Min. ver. |
277 |---------------------------+--------------------------------------+-----------|
278 | Statistics-Frequency | * Statistics::Frequency - NA | None |
279 |==============================================================================|
280 | Used by: |
281 |------------------------------------------------------------------------------|
282 | * Bio::Microarray::Tools::ReseqChip - Statistics::Frequency |
283 ==============================================================================
284 ==============================================================================
285 | Distribution | Module used - Description | Min. ver. |
286 |---------------------------+--------------------------------------+-----------|
287 | Storable | * Storable - Persistent data | None |
288 | | structure mechanism | |
289 |==============================================================================|
290 | Used by: |
291 |------------------------------------------------------------------------------|
292 | * Bio::DB::SeqFeature::Store - Storable |
293 | * Bio::Restriction::Enzyme - Storable |
294 ==============================================================================
295 ==============================================================================
296 | Distribution | Module used - Description | Min. ver. |
297 |---------------------------+--------------------------------------+-----------|
298 | Test-Exception | * Test::Exception - Functions for | None |
299 | | testing exception-based code | |
300 |==============================================================================|
301 | Used by: |
302 |------------------------------------------------------------------------------|
303 | * Bio::Root::Test - Test::Exception |
304 ==============================================================================
305 ==============================================================================
306 | Distribution | Module used - Description | Min. ver. |
307 |---------------------------+--------------------------------------+-----------|
308 | Test-Simple | * Test::Builder - NA | None |
309 | | * Test::More - More functions for | |
310 | | writing tests | |
311 |==============================================================================|
312 | Used by: |
313 |------------------------------------------------------------------------------|
314 | * Bio::Root::Test::Warn - Test::Builder |
315 | * Bio::Root::Test - Test::More |
316 ==============================================================================
317 ==============================================================================
318 | Distribution | Module used - Description | Min. ver. |
319 |---------------------------+--------------------------------------+-----------|
320 | Test-Warn | * Test::Warn - NA | None |
321 |==============================================================================|
322 | Used by: |
323 |------------------------------------------------------------------------------|
324 | * Bio::Root::Test - Test::Warn |
325 | * Bio::Root::Test::Warn - Test::Warn |
326 ==============================================================================
327 ==============================================================================
328 | Distribution | Module used - Description | Min. ver. |
329 |---------------------------+--------------------------------------+-----------|
330 | Tie-Cacher | * Tie::Cacher - NA | None |
331 |==============================================================================|
332 | Used by: |
333 |------------------------------------------------------------------------------|
334 | * Bio::DB::SeqFeature::Store - Tie::Cacher |
335 ==============================================================================
336 ==============================================================================
337 | Distribution | Module used - Description | Min. ver. |
338 |---------------------------+--------------------------------------+-----------|
339 | Time-HiRes | * Time::HiRes - High resolution | None |
340 | | time, sleep, and alarm | |
341 |==============================================================================|
342 | Used by: |
343 |------------------------------------------------------------------------------|
344 | * Bio::DB::SeqFeature::Store::Loader - Time::HiRes |
345 | * Bio::DB::SeqFeature::Store::DBI::mysql - Time::HiRes |
346 | * Bio::DB::SeqFeature::Store::DBI::Pg - Time::HiRes |
347 ==============================================================================
348 ==============================================================================
349 | Distribution | Module used - Description | Min. ver. |
350 |---------------------------+--------------------------------------+-----------|
351 | Tree-DAG_Node | * Tree::DAG_Node - base class for | None |
352 | | trees | |
353 |==============================================================================|
354 | Used by: |
355 |------------------------------------------------------------------------------|
356 | * Bio::TreeIO::svggraph - Tree::DAG_Node |
357 ==============================================================================
358 ==============================================================================
359 | Distribution | Module used - Description | Min. ver. |
360 |---------------------------+--------------------------------------+-----------|
361 | URI | * URI - NA | None |
362 | | * URI::Escape - General URI | |
363 | | escaping/unescaping functions | |
364 |==============================================================================|
365 | Used by: |
366 |------------------------------------------------------------------------------|
367 | * Bio::DB::NCBIHelper - URI |
368 | * Bio::DB::Query::WebQuery - URI |
369 | * Bio::Tools::EUtilities::EUtilParameters - URI |
370 | * Bio::DB::CUTG - URI::Escape |
371 | * Bio::DB::Biblio::eutils - URI::Escape |
372 | * Bio::FeatureIO::gff - URI::Escape |
373 | * Bio::FeatureIO::interpro - URI::Escape |
374 | * Bio::SeqFeature::Annotated - URI::Escape |
375 ==============================================================================
376 ==============================================================================
377 | Distribution | Module used - Description | Min. ver. |
378 |---------------------------+--------------------------------------+-----------|
379 | WWW-Mechanize | * WWW::Mechanize - Automates web | None |
380 | | page form & link interaction | |
381 |==============================================================================|
382 | Used by: |
383 |------------------------------------------------------------------------------|
384 | * Bio::DB::MeSH - WWW::Mechanize |
385 ==============================================================================
386 ==============================================================================
387 | Distribution | Module used - Description | Min. ver. |
388 |---------------------------+--------------------------------------+-----------|
389 | Win32 | * Win32 - NA | None |
390 |==============================================================================|
391 | Used by: |
392 |------------------------------------------------------------------------------|
393 | * Bio::DB::Fasta - Win32 |
394 | * Bio::DB::GFF - Win32 |
395 | * Bio::DB::Qual - Win32 |
396 | * Bio::Root::IO - Win32 |
397 ==============================================================================
398 ==============================================================================
399 | Distribution | Module used - Description | Min. ver. |
400 |---------------------------+--------------------------------------+-----------|
401 | XML-DOM | * XML::DOM - Implements Level 1 of | None |
402 | | W3's DOM | |
403 |==============================================================================|
404 | Used by: |
405 |------------------------------------------------------------------------------|
406 | * Bio::FeatureIO::interpro - XML::DOM |
407 | * Bio::SeqIO::bsml - XML::DOM |
408 | * Bio::SeqIO::interpro - XML::DOM |
409 ==============================================================================
410 ==============================================================================
411 | Distribution | Module used - Description | Min. ver. |
412 |---------------------------+--------------------------------------+-----------|
413 | XML-DOM-XPath | * XML::DOM::XPath - NA | None |
414 |==============================================================================|
415 | Used by: |
416 |------------------------------------------------------------------------------|
417 | * Bio::FeatureIO::interpro - XML::DOM::XPath |
418 | * Bio::SeqIO::interpro - XML::DOM::XPath |
419 ==============================================================================
420 ==============================================================================
421 | Distribution | Module used - Description | Min. ver. |
422 |---------------------------+--------------------------------------+-----------|
423 | XML-LibXML | * XML::LibXML - Interface to the | None |
424 | | libxml library | |
425 | | * XML::LibXML::Reader - NA | |
426 |==============================================================================|
427 | Used by: |
428 |------------------------------------------------------------------------------|
429 | * Bio::TreeIO::phyloxml - XML::LibXML |
430 | * Bio::TreeIO::phyloxml - XML::LibXML::Reader |
431 ==============================================================================
432 ==============================================================================
433 | Distribution | Module used - Description | Min. ver. |
434 |---------------------------+--------------------------------------+-----------|
435 | XML-Parser | * XML::Parser - Flexible fast | None |
436 | | parser with plug-in styles | |
437 |==============================================================================|
438 | Used by: |
439 |------------------------------------------------------------------------------|
440 | * Bio::Biblio::IO::medlinexml - XML::Parser |
441 ==============================================================================
442 ==============================================================================
443 | Distribution | Module used - Description | Min. ver. |
444 |---------------------------+--------------------------------------+-----------|
445 | XML-SAX | * XML::SAX - NA | None |
446 |==============================================================================|
447 | Used by: |
448 |------------------------------------------------------------------------------|
449 | * Bio::ClusterIO::dbsnp - XML::SAX |
450 | * Bio::SearchIO::blastxml - XML::SAX |
451 | * Bio::SeqIO::bsml_sax - XML::SAX |
452 | * Bio::SeqIO::tigrxml - XML::SAX |
453 ==============================================================================
454 ==============================================================================
455 | Distribution | Module used - Description | Min. ver. |
456 |---------------------------+--------------------------------------+-----------|
457 | XML-SAX-Writer | * XML::SAX::Writer - NA | None |
458 |==============================================================================|
459 | Used by: |
460 |------------------------------------------------------------------------------|
461 | * Bio::SeqIO::tigrxml - XML::SAX::Writer |
462 ==============================================================================
463 ==============================================================================
464 | Distribution | Module used - Description | Min. ver. |
465 |---------------------------+--------------------------------------+-----------|
466 | XML-Simple | * XML::Simple - Easy API to | None |
467 | | maintain XML (esp config files) | |
468 |==============================================================================|
469 | Used by: |
470 |------------------------------------------------------------------------------|
471 | * Bio::DB::HIV::HIVQueryHelper - XML::Simple |
472 | * Bio::DB::Query::HIVQuery - XML::Simple |
473 | * Bio::Tools::EUtilities - XML::Simple |
474 ==============================================================================
475 ==============================================================================
476 | Distribution | Module used - Description | Min. ver. |
477 |---------------------------+--------------------------------------+-----------|
478 | XML-Twig | * XML::Twig - A module for easy | None |
479 | | processing of XML | |
480 |==============================================================================|
481 | Used by: |
482 |------------------------------------------------------------------------------|
483 | * Bio::DB::Biblio::eutils - XML::Twig |
484 | * Bio::DB::Taxonomy::entrez - XML::Twig |
485 | * Bio::Variation::IO::xml - XML::Twig |
486 ==============================================================================
487 ==============================================================================
488 | Distribution | Module used - Description | Min. ver. |
489 |---------------------------+--------------------------------------+-----------|
490 | XML-Writer | * XML::Writer - Module for writing | 0.4 |
491 | | XML documents | |
492 |==============================================================================|
493 | Used by: |
494 |------------------------------------------------------------------------------|
495 | * Bio::SearchIO::Writer::BSMLResultWriter - XML::Writer |
496 | * Bio::SeqIO::agave - XML::Writer |
497 | * Bio::SeqIO::chadoxml - XML::Writer |
498 | * Bio::SeqIO::tinyseq - XML::Writer |
499 | * Bio::SeqIO::game::gameWriter - XML::Writer |
500 | * Bio::Variation::IO::xml - XML::Writer |
501 ==============================================================================
502 ==============================================================================
503 | Distribution | Module used - Description | Min. ver. |
504 |---------------------------+--------------------------------------+-----------|
505 | bioperl-ext | * Bio::Ext::Align - NA | None |
506 | | * Bio::SeqIO::staden::read - NA | |
507 |==============================================================================|
508 | Used by: |
509 |------------------------------------------------------------------------------|
510 | * Bio::SearchDist - Bio::Ext::Align |
511 | * Bio::Tools::AlignFactory - Bio::Ext::Align |
512 | * Bio::Tools::dpAlign - Bio::Ext::Align |
513 | * Bio::Tools::pSW - Bio::Ext::Align |
514 | * Bio::SeqIO::abi - Bio::SeqIO::staden::read |
515 | * Bio::SeqIO::alf - Bio::SeqIO::staden::read |
516 | * Bio::SeqIO::ctf - Bio::SeqIO::staden::read |
517 | * Bio::SeqIO::exp - Bio::SeqIO::staden::read |
518 | * Bio::SeqIO::pln - Bio::SeqIO::staden::read |
519 | * Bio::SeqIO::ztr - Bio::SeqIO::staden::read |
520 ==============================================================================
521 ==============================================================================
522 | Distribution | Module used - Description | Min. ver. |
523 |---------------------------+--------------------------------------+-----------|
524 | libwww-perl | * HTTP::Request - Class | 5.64 |
525 | | encapsulating HTTP Requests | |
526 | | * HTTP::Request::Common - Functions | |
527 | | that generate HTTP::Requests | |
528 | | * HTTP::Response - Class | |
529 | | encapsulating HTTP Responses | |
530 | | * LWP - Libwww-perl | |
531 | | * LWP::Simple - Simple procedural | |
532 | | interface to libwww-perl | |
533 | | * LWP::UserAgent - A WWW UserAgent | |
534 | | class | |
535 |==============================================================================|
536 | Used by: |
537 |------------------------------------------------------------------------------|
538 | * Bio::Tools::EUtilities::EUtilParameters - HTTP::Request |
539 | * Bio::DB::DBFetch - HTTP::Request::Common |
540 | * Bio::DB::HIV - HTTP::Request::Common |
541 | * Bio::DB::NCBIHelper - HTTP::Request::Common |
542 | * Bio::DB::SwissProt - HTTP::Request::Common |
543 | * Bio::DB::WebDBSeqI - HTTP::Request::Common |
544 | * Bio::DB::Query::WebQuery - HTTP::Request::Common |
545 | * Bio::Tools::Run::RemoteBlast - HTTP::Request::Common |
546 | * Bio::DB::WebDBSeqI - HTTP::Response |
547 | * Bio::Tools::Protparam - LWP |
548 | * Bio::Tools::Run::RemoteBlast - LWP |
549 | * Bio::DB::Biblio::eutils - LWP::Simple |
550 | * Bio::Root::IO - LWP::Simple |
551 | * Bio::DB::GenericWebAgent - LWP::UserAgent |
552 | * Bio::DB::MeSH - LWP::UserAgent |
553 | * Bio::DB::WebDBSeqI - LWP::UserAgent |
554 | * Bio::DB::Query::WebQuery - LWP::UserAgent |
555 | * Bio::Root::Build - LWP::UserAgent |
556 ==============================================================================
557 ==============================================================================
558 | Distribution | Module used - Description | Min. ver. |
559 |---------------------------+--------------------------------------+-----------|
560 | libxml-perl | * XML::Parser::PerlSAX - NA | None |
561 |==============================================================================|
562 | Used by: |
563 |------------------------------------------------------------------------------|
564 | * Bio::OntologyIO::InterProParser - XML::Parser::PerlSAX |
565 | * Bio::SeqIO::tinyseq - XML::Parser::PerlSAX |
566 | * Bio::SeqIO::game::gameSubs - XML::Parser::PerlSAX |
567 ==============================================================================
568 ==============================================================================
569 | Distribution | Module used - Description | Min. ver. |
570 |---------------------------+--------------------------------------+-----------|
571 | mod_perl | * Apache2::SubProcess - NA | None |
572 |==============================================================================|
573 | Used by: |
574 |------------------------------------------------------------------------------|
575 | * Bio::DB::WebDBSeqI - Apache2::SubProcess |
576 ==============================================================================