t/data/polymorphism.xml

   1 <seqDiff id="M20132" moltype="rna" offset="362" sysname="[c.+4G|A|T;c.+31C|A]" trivname="[E2|K|X;Q11|K]">
   2     <DNA number="1.1" start="4" end="4" length="1" isMutation="0">
   3         <label>point</label>
   4         <label>transition</label>
   5         <proof>computed</proof>
   6         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
   7         <allele_ori>g</allele_ori>
   8         <allele_mut>a</allele_mut>
   9         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  10         <restriction_changes>-BccI</restriction_changes>
  11     </DNA>
  12     <DNA number="1.2" start="4" end="4" length="1" isMutation="0">
  13         <label>point</label>
  14         <label>transversion</label>
  15         <proof>computed</proof>
  16         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
  17         <allele_ori>g</allele_ori>
  18         <allele_mut>t</allele_mut>
  19         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  20         <restriction_changes>-BccI</restriction_changes>
  21     </DNA>
  22     <RNA number="1.1" start="4" end="4" length="1" isMutation="0">
  23         <label>missense</label>
  24         <proof>experimental</proof>
  25         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
  26         <allele_ori>g</allele_ori>
  27         <allele_mut>a</allele_mut>
  28         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  29         <codon codon_ori="gaa" codon_mut="aaa" codon_pos="1"></codon>
  30         <restriction_changes>-BccI</restriction_changes>
  31         <region>coding</region>
  32     </RNA>
  33     <RNA number="1.2" start="4" end="4" length="1" isMutation="0">
  34         <label>nonsense</label>
  35         <proof>experimental</proof>
  36         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
  37         <allele_ori>g</allele_ori>
  38         <allele_mut>t</allele_mut>
  39         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  40         <codon codon_ori="gaa" codon_mut="taa" codon_pos="1"></codon>
  41         <restriction_changes>-BccI</restriction_changes>
  42         <region>coding</region>
  43     </RNA>
  44     <AA number="1.1" start="2" end="2" length="1" isMutation="0">
  45         <label>substitution</label>
  46         <label>conservative</label>
  47         <proof>computed</proof>
  48         <allele_ori>E</allele_ori>
  49         <allele_mut>K</allele_mut>
  50     </AA>
  51     <AA number="1.2" start="2" end="2" length="1" isMutation="0">
  52         <label>truncation</label>
  53         <proof>computed</proof>
  54         <allele_ori>E</allele_ori>
  55         <allele_mut>*</allele_mut>
  56     </AA>
  57     <DNA number="2" start="31" end="31" length="1" isMutation="0">
  58         <label>point</label>
  59         <label>transversion</label>
  60         <proof>computed</proof>
  61         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
  62         <allele_ori>c</allele_ori>
  63         <allele_mut>a</allele_mut>
  64         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  65         <restriction_changes>-CviRI, -SfaNI</restriction_changes>
  66     </DNA>
  67     <RNA number="2" start="31" end="31" length="1" isMutation="0">
  68         <label>missense</label>
  69         <proof>experimental</proof>
  70         <upFlank>gaagattcagccaagctcaaggatg</upFlank>
  71         <allele_ori>c</allele_ori>
  72         <allele_mut>a</allele_mut>
  73         <dnFlank>aagtgcagttagggctgggaagggt</dnFlank>
  74         <codon codon_ori="caa" codon_mut="aaa" codon_pos="1"></codon>
  75         <restriction_changes>-CviRI, -SfaNI</restriction_changes>
  76         <region>coding</region>
  77     </RNA>
  78     <AA number="2" start="11" end="11" length="1" isMutation="0">
  79         <label>substitution</label>
  80         <label>conservative</label>
  81         <proof>computed</proof>
  82         <allele_ori>Q</allele_ori>
  83         <allele_mut>K</allele_mut>
  84     </AA>
  85 </seqDiff>