t/SeqIO/bsml_sax.t

   1 # -*-Perl-*- Test Harness script for Bioperl
   2 # $Id$
   3
   4 use strict;
   5
   6 BEGIN {
   7         use lib '.';
   8         use Bio::Root::Test;
   9
  10         test_begin(-tests => 15,
  11                            -requires_modules => [qw(XML::SAX
  12                                                                             XML::SAX::Writer
  13                                                                                 XML::SAX::Base)]);
  14
  15         use_ok('Bio::SeqIO');
  16 }
  17
  18 my $verbose = test_debug();
  19
  20 my $str = Bio::SeqIO->new(-format => 'bsml_sax',
  21                           -verbose => $verbose,
  22                           -file => test_input_file('U83300.bsml'));
  23 my $seq = $str->next_seq;
  24 isa_ok($seq, 'Bio::Seq::RichSeqI');
  25 my @refs = $seq->annotation->get_Annotations('reference');
  26 is(@refs, 2);
  27 is($seq->display_id,'MIVN83300');
  28 is($seq->molecule ,'dna');
  29 ok(! $seq->is_circular);
  30 is($seq->get_dates,2);
  31 is($seq->accession_number, 'U83300');
  32 is($seq->seq_version,1);
  33 my @feats = $seq->get_SeqFeatures;
  34 is(@feats, 2);
  35 is($feats[1]->start, 1);
  36 is($feats[1]->end, 946);
  37 is($feats[1]->get_tag_values('db_xref'), 3);
  38 is($seq->annotation->get_Annotations('reference'),2);
  39 is($seq->annotation->get_Annotations('dblink'),2);