| blob | 112edbec5028f4064d4682af90a335fff85171f3 |
1 BioPerl Dependencies
3 NOTE : This file was auto-generated by the helper script
4 maintenance/dependencies.pl. Do not edit directly!
6 The following packages are used by BioPerl. While not all are required for
7 BioPerl to operate properly, some functionality will be missing without them.
8 You can easily choose to install all of these during the normal installation
9 process. Note that the PPM version of the BioPerl packages always tries to
10 install all dependencies.
12 The DBD::mysql, DB_File and XML::Parser modules require other applications or
13 databases: MySQL, Berkeley DB, and expat respectively.
15 NB: This list of packages is not authoritative. See the 'requires',
16 'build_requires' and 'recommends' sections of Build.PL instead.
18 ==============================================================================
19 | Distribution | Module used - Description | Min. ver. |
20 |---------------------------+--------------------------------------+-----------|
21 | AcePerl | * Ace - Interface to ACEDB (Popular | None |
22 | | Genome DB) | |
23 | | * Ace::Sequence::Homol - NA | |
24 |==============================================================================|
25 | Used by: |
26 |------------------------------------------------------------------------------|
27 | * Bio::DB::Ace - Ace |
28 | * Bio::DB::GFF::Adaptor::ace - Ace |
29 | * Bio::DB::GFF::Adaptor::dbi::mysqlace - Ace::Sequence::Homol |
30 | * Bio::DB::GFF::Adaptor::dbi::oracleace - Ace::Sequence::Homol |
31 ==============================================================================
32 ==============================================================================
33 | Distribution | Module used - Description | Min. ver. |
34 |---------------------------+--------------------------------------+-----------|
35 | Algorithm-Munkres | * Algorithm::Munkres - Solution to | None |
36 | | classical Assignment Problem | |
37 |==============================================================================|
38 | Used by: |
39 |------------------------------------------------------------------------------|
40 | * Bio::PhyloNetwork - Algorithm::Munkres |
41 ==============================================================================
42 ==============================================================================
43 | Distribution | Module used - Description | Min. ver. |
44 |---------------------------+--------------------------------------+-----------|
45 | Archive-Tar | * Archive::Tar - Read, write and | None |
46 | | manipulate tar files | |
47 |==============================================================================|
48 | Used by: |
49 |------------------------------------------------------------------------------|
50 | * Bio::Root::Build - Archive::Tar |
51 ==============================================================================
52 ==============================================================================
53 | Distribution | Module used - Description | Min. ver. |
54 |---------------------------+--------------------------------------+-----------|
55 | Array-Compare | * Array::Compare - Class to compare | None |
56 | | two arrays | |
57 |==============================================================================|
58 | Used by: |
59 |------------------------------------------------------------------------------|
60 | * Bio::PhyloNetwork - Array::Compare |
61 ==============================================================================
62 ==============================================================================
63 | Distribution | Module used - Description | Min. ver. |
64 |---------------------------+--------------------------------------+-----------|
65 | Bio-ASN1-EntrezGene | * Bio::ASN1::EntrezGene - Parser | None |
66 | | for NCBI Entrez Gene (ASN.1- | |
67 | | format) | |
68 |==============================================================================|
69 | Used by: |
70 |------------------------------------------------------------------------------|
71 | * Bio::SeqIO::entrezgene - Bio::ASN1::EntrezGene |
72 ==============================================================================
73 ==============================================================================
74 | Distribution | Module used - Description | Min. ver. |
75 |---------------------------+--------------------------------------+-----------|
76 | Compress-Zlib | * Compress::Zlib - Interface to | None |
77 | | zlib compression library | |
78 |==============================================================================|
79 | Used by: |
80 |------------------------------------------------------------------------------|
81 | * Bio::DB::SeqFeature::Store - Compress::Zlib |
82 ==============================================================================
83 ==============================================================================
84 | Distribution | Module used - Description | Min. ver. |
85 |---------------------------+--------------------------------------+-----------|
86 | Convert-Binary-C | * Convert::Binary::C - Binary Data | None |
87 | | Conversion using C Types | |
88 |==============================================================================|
89 | Used by: |
90 |------------------------------------------------------------------------------|
91 | * Bio::SeqIO::strider - Convert::Binary::C |
92 ==============================================================================
93 ==============================================================================
94 | Distribution | Module used - Description | Min. ver. |
95 |---------------------------+--------------------------------------+-----------|
96 | DBI | * DBI - Generic Database Interface | None |
97 | | (see DBD modules) | |
98 |==============================================================================|
99 | Used by: |
100 |------------------------------------------------------------------------------|
101 | * Bio::DB::GFF::Adaptor::dbi - DBI |
102 | * Bio::DB::GFF::Adaptor::dbi::caching_handle - DBI |
103 | * Bio::DB::SeqFeature::Store::DBI::mysql - DBI |
104 | * Bio::DB::SeqFeature::Store::DBI::Pg - DBI |
105 ==============================================================================
106 ==============================================================================
107 | Distribution | Module used - Description | Min. ver. |
108 |---------------------------+--------------------------------------+-----------|
109 | Data-Stag | * Data::Stag - NA | None |
110 | | * Data::Stag::XMLWriter - NA | |
111 |==============================================================================|
112 | Used by: |
113 |------------------------------------------------------------------------------|
114 | * Bio::Annotation::TagTree - Data::Stag |
115 | * Bio::SeqIO::chaosxml - Data::Stag::XMLWriter |
116 ==============================================================================
117 ==============================================================================
118 | Distribution | Module used - Description | Min. ver. |
119 |---------------------------+--------------------------------------+-----------|
120 | Graph | * Graph::Directed - NA | None |
121 |==============================================================================|
122 | Used by: |
123 |------------------------------------------------------------------------------|
124 | * Bio::PhyloNetwork - Graph::Directed |
125 | * Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph::Directed |
126 ==============================================================================
127 ==============================================================================
128 | Distribution | Module used - Description | Min. ver. |
129 |---------------------------+--------------------------------------+-----------|
130 | HTML-Parser | * HTML::HeadParser - Parse <HEAD> | None |
131 | | section of HTML documents | |
132 |==============================================================================|
133 | Used by: |
134 |------------------------------------------------------------------------------|
135 | * Bio::Tools::Analysis::DNA::ESEfinder - HTML::HeadParser |
136 | * Bio::Tools::Analysis::Protein::ELM - HTML::HeadParser |
137 ==============================================================================
138 ==============================================================================
139 | Distribution | Module used - Description | Min. ver. |
140 |---------------------------+--------------------------------------+-----------|
141 | IO-String | * IO::String - IO::File interface | None |
142 | | for in-core strings | |
143 |==============================================================================|
144 | Used by: |
145 |------------------------------------------------------------------------------|
146 | * Bio::PhyloNetwork - IO::String |
147 | * Bio::DB::CUTG - IO::String |
148 | * Bio::DB::SeqHound - IO::String |
149 | * Bio::DB::WebDBSeqI - IO::String |
150 | * Bio::Index::Blast - IO::String |
151 | * Bio::Index::BlastTable - IO::String |
152 | * Bio::Index::Hmmer - IO::String |
153 | * Bio::SearchIO::Writer::BSMLResultWriter - IO::String |
154 | * Bio::SeqIO::game::gameWriter - IO::String |
155 | * Bio::Tools::Analysis::DNA::ESEfinder - IO::String |
156 | * Bio::Tools::Analysis::Protein::Domcut - IO::String |
157 | * Bio::Tools::Analysis::Protein::ELM - IO::String |
158 | * Bio::Tools::Analysis::Protein::GOR4 - IO::String |
159 | * Bio::Tools::Analysis::Protein::HNN - IO::String |
160 | * Bio::Tools::Analysis::Protein::Mitoprot - IO::String |
161 | * Bio::Tools::Analysis::Protein::NetPhos - IO::String |
162 | * Bio::Tools::Analysis::Protein::Scansite - IO::String |
163 | * Bio::Tools::Analysis::Protein::Sopma - IO::String |
164 | * Bio::Tools::Phylo::Molphy - IO::String |
165 | * Bio::Tools::Phylo::PAML - IO::String |
166 | * Bio::Tools::Run::RemoteBlast - IO::String |
167 | * Bio::TreeIO::cluster - IO::String |
168 | * Bio::TreeIO::nexus - IO::String |
169 | * Bio::Variation::IO::xml - IO::String |
170 ==============================================================================
171 ==============================================================================
172 | Distribution | Module used - Description | Min. ver. |
173 |---------------------------+--------------------------------------+-----------|
174 | Math-Random | * Math::Random - Random Number | None |
175 | | Generators | |
176 |==============================================================================|
177 | Used by: |
178 |------------------------------------------------------------------------------|
179 | * Bio::PhyloNetwork::RandomFactory - Math::Random |
180 ==============================================================================
181 ==============================================================================
182 | Distribution | Module used - Description | Min. ver. |
183 |---------------------------+--------------------------------------+-----------|
184 | Memoize | * Memoize - Automatically cache | None |
185 | | results of functions | |
186 |==============================================================================|
187 | Used by: |
188 |------------------------------------------------------------------------------|
189 | * Bio::DB::SeqFeature::Store::DBI::mysql - Memoize |
190 | * Bio::DB::SeqFeature::Store::DBI::Pg - Memoize |
191 ==============================================================================
192 ==============================================================================
193 | Distribution | Module used - Description | Min. ver. |
194 |---------------------------+--------------------------------------+-----------|
195 | Module-Build | * Module::Build - Build, test, and | 0.2805 |
196 | | install Perl modules | |
197 | | * Module::Build::PPMMaker - NA | |
198 |==============================================================================|
199 | Used by: |
200 |------------------------------------------------------------------------------|
201 | * Bio::Root::Build - Module::Build |
202 | * Bio::Root::Test - Module::Build |
203 | * Bio::Root::Build - Module::Build::PPMMaker |
204 ==============================================================================
205 ==============================================================================
206 | Distribution | Module used - Description | Min. ver. |
207 |---------------------------+--------------------------------------+-----------|
208 | PostScript | * PostScript::TextBlock - Objects | None |
209 | | used by PS::Document | |
210 |==============================================================================|
211 | Used by: |
212 |------------------------------------------------------------------------------|
213 | * Bio::Tree::Draw::Cladogram - PostScript::TextBlock |
214 ==============================================================================
215 ==============================================================================
216 | Distribution | Module used - Description | Min. ver. |
217 |---------------------------+--------------------------------------+-----------|
218 | SVG-Graph | * SVG::Graph - Series of Modules to | None |
219 | | produce SVG graphs | |
220 | | * SVG::Graph::Data - NA | |
221 | | * SVG::Graph::Data::Node - NA | |
222 | | * SVG::Graph::Data::Tree - NA | |
223 |==============================================================================|
224 | Used by: |
225 |------------------------------------------------------------------------------|
226 | * Bio::TreeIO::svggraph - SVG::Graph |
227 | * Bio::TreeIO::svggraph - SVG::Graph::Data |
228 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Node |
229 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Tree |
230 ==============================================================================
231 ==============================================================================
232 | Distribution | Module used - Description | Min. ver. |
233 |---------------------------+--------------------------------------+-----------|
234 | Set-Scalar | * Set::Scalar - Set of scalars (inc | None |
235 | | references) | |
236 |==============================================================================|
237 | Used by: |
238 |------------------------------------------------------------------------------|
239 | * Bio::Tree::Compatible - Set::Scalar |
240 ==============================================================================
241 ==============================================================================
242 | Distribution | Module used - Description | Min. ver. |
243 |---------------------------+--------------------------------------+-----------|
244 | Spreadsheet-ParseExcel | * Spreadsheet::ParseExcel - Get | None |
245 | | information from Excel file | |
246 |==============================================================================|
247 | Used by: |
248 |------------------------------------------------------------------------------|
249 | * Bio::SeqIO::excel - Spreadsheet::ParseExcel |
250 ==============================================================================
251 ==============================================================================
252 | Distribution | Module used - Description | Min. ver. |
253 |---------------------------+--------------------------------------+-----------|
254 | Storable | * Storable - Persistent data | None |
255 | | structure mechanism | |
256 |==============================================================================|
257 | Used by: |
258 |------------------------------------------------------------------------------|
259 | * Bio::DB::SeqFeature::Store - Storable |
260 | * Bio::Restriction::Enzyme - Storable |
261 ==============================================================================
262 ==============================================================================
263 | Distribution | Module used - Description | Min. ver. |
264 |---------------------------+--------------------------------------+-----------|
265 | Test-Exception | * Test::Exception - Functions for | None |
266 | | testing exception-based code | |
267 |==============================================================================|
268 | Used by: |
269 |------------------------------------------------------------------------------|
270 | * Bio::Root::Test - Test::Exception |
271 ==============================================================================
272 ==============================================================================
273 | Distribution | Module used - Description | Min. ver. |
274 |---------------------------+--------------------------------------+-----------|
275 | Test-Simple | * Test::Builder - NA | None |
276 | | * Test::More - More functions for | |
277 | | writing tests | |
278 |==============================================================================|
279 | Used by: |
280 |------------------------------------------------------------------------------|
281 | * Bio::Root::Test::Warn - Test::Builder |
282 | * Bio::Root::Test - Test::More |
283 ==============================================================================
284 ==============================================================================
285 | Distribution | Module used - Description | Min. ver. |
286 |---------------------------+--------------------------------------+-----------|
287 | Test-Warn | * Test::Warn - NA | None |
288 |==============================================================================|
289 | Used by: |
290 |------------------------------------------------------------------------------|
291 | * Bio::Root::Test - Test::Warn |
292 | * Bio::Root::Test::Warn - Test::Warn |
293 ==============================================================================
294 ==============================================================================
295 | Distribution | Module used - Description | Min. ver. |
296 |---------------------------+--------------------------------------+-----------|
297 | Tie-Cacher | * Tie::Cacher - NA | None |
298 |==============================================================================|
299 | Used by: |
300 |------------------------------------------------------------------------------|
301 | * Bio::DB::SeqFeature::Store - Tie::Cacher |
302 ==============================================================================
303 ==============================================================================
304 | Distribution | Module used - Description | Min. ver. |
305 |---------------------------+--------------------------------------+-----------|
306 | Time-HiRes | * Time::HiRes - High resolution | None |
307 | | time, sleep, and alarm | |
308 |==============================================================================|
309 | Used by: |
310 |------------------------------------------------------------------------------|
311 | * Bio::DB::SeqFeature::Store::Loader - Time::HiRes |
312 | * Bio::DB::SeqFeature::Store::DBI::mysql - Time::HiRes |
313 | * Bio::DB::SeqFeature::Store::DBI::Pg - Time::HiRes |
314 ==============================================================================
315 ==============================================================================
316 | Distribution | Module used - Description | Min. ver. |
317 |---------------------------+--------------------------------------+-----------|
318 | Tree-DAG_Node | * Tree::DAG_Node - base class for | None |
319 | | trees | |
320 |==============================================================================|
321 | Used by: |
322 |------------------------------------------------------------------------------|
323 | * Bio::TreeIO::svggraph - Tree::DAG_Node |
324 ==============================================================================
325 ==============================================================================
326 | Distribution | Module used - Description | Min. ver. |
327 |---------------------------+--------------------------------------+-----------|
328 | URI | * URI - NA | None |
329 | | * URI::Escape - General URI | |
330 | | escaping/unescaping functions | |
331 |==============================================================================|
332 | Used by: |
333 |------------------------------------------------------------------------------|
334 | * Bio::DB::NCBIHelper - URI |
335 | * Bio::DB::Query::WebQuery - URI |
336 | * Bio::Tools::EUtilities::EUtilParameters - URI |
337 | * Bio::DB::CUTG - URI::Escape |
338 | * Bio::DB::Biblio::eutils - URI::Escape |
339 | * Bio::FeatureIO::gff - URI::Escape |
340 | * Bio::FeatureIO::interpro - URI::Escape |
341 | * Bio::SeqFeature::Annotated - URI::Escape |
342 ==============================================================================
343 ==============================================================================
344 | Distribution | Module used - Description | Min. ver. |
345 |---------------------------+--------------------------------------+-----------|
346 | WWW-Mechanize | * WWW::Mechanize - Automates web | None |
347 | | page form & link interaction | |
348 |==============================================================================|
349 | Used by: |
350 |------------------------------------------------------------------------------|
351 | * Bio::DB::MeSH - WWW::Mechanize |
352 ==============================================================================
353 ==============================================================================
354 | Distribution | Module used - Description | Min. ver. |
355 |---------------------------+--------------------------------------+-----------|
356 | Win32 | * Win32 - NA | None |
357 |==============================================================================|
358 | Used by: |
359 |------------------------------------------------------------------------------|
360 | * Bio::DB::Fasta - Win32 |
361 | * Bio::DB::GFF - Win32 |
362 | * Bio::DB::Qual - Win32 |
363 | * Bio::Root::IO - Win32 |
364 ==============================================================================
365 ==============================================================================
366 | Distribution | Module used - Description | Min. ver. |
367 |---------------------------+--------------------------------------+-----------|
368 | XML-DOM | * XML::DOM - Implements Level 1 of | None |
369 | | W3's DOM | |
370 |==============================================================================|
371 | Used by: |
372 |------------------------------------------------------------------------------|
373 | * Bio::FeatureIO::interpro - XML::DOM |
374 | * Bio::SeqIO::bsml - XML::DOM |
375 | * Bio::SeqIO::interpro - XML::DOM |
376 ==============================================================================
377 ==============================================================================
378 | Distribution | Module used - Description | Min. ver. |
379 |---------------------------+--------------------------------------+-----------|
380 | XML-DOM-XPath | * XML::DOM::XPath - NA | None |
381 |==============================================================================|
382 | Used by: |
383 |------------------------------------------------------------------------------|
384 | * Bio::FeatureIO::interpro - XML::DOM::XPath |
385 | * Bio::SeqIO::interpro - XML::DOM::XPath |
386 ==============================================================================
387 ==============================================================================
388 | Distribution | Module used - Description | Min. ver. |
389 |---------------------------+--------------------------------------+-----------|
390 | XML-LibXML | * XML::LibXML - Interface to the | None |
391 | | libxml library | |
392 | | * XML::LibXML::Reader - NA | |
393 |==============================================================================|
394 | Used by: |
395 |------------------------------------------------------------------------------|
396 | * Bio::TreeIO::phyloxml - XML::LibXML |
397 | * Bio::TreeIO::phyloxml - XML::LibXML::Reader |
398 ==============================================================================
399 ==============================================================================
400 | Distribution | Module used - Description | Min. ver. |
401 |---------------------------+--------------------------------------+-----------|
402 | XML-Parser | * XML::Parser - Flexible fast | None |
403 | | parser with plug-in styles | |
404 |==============================================================================|
405 | Used by: |
406 |------------------------------------------------------------------------------|
407 | * Bio::Biblio::IO::medlinexml - XML::Parser |
408 ==============================================================================
409 ==============================================================================
410 | Distribution | Module used - Description | Min. ver. |
411 |---------------------------+--------------------------------------+-----------|
412 | XML-SAX | * XML::SAX - NA | None |
413 |==============================================================================|
414 | Used by: |
415 |------------------------------------------------------------------------------|
416 | * Bio::ClusterIO::dbsnp - XML::SAX |
417 | * Bio::SearchIO::blastxml - XML::SAX |
418 | * Bio::SeqIO::bsml_sax - XML::SAX |
419 | * Bio::SeqIO::tigrxml - XML::SAX |
420 ==============================================================================
421 ==============================================================================
422 | Distribution | Module used - Description | Min. ver. |
423 |---------------------------+--------------------------------------+-----------|
424 | XML-SAX-Writer | * XML::SAX::Writer - NA | None |
425 |==============================================================================|
426 | Used by: |
427 |------------------------------------------------------------------------------|
428 | * Bio::SeqIO::tigrxml - XML::SAX::Writer |
429 ==============================================================================
430 ==============================================================================
431 | Distribution | Module used - Description | Min. ver. |
432 |---------------------------+--------------------------------------+-----------|
433 | XML-Simple | * XML::Simple - Easy API to | None |
434 | | maintain XML (esp config files) | |
435 |==============================================================================|
436 | Used by: |
437 |------------------------------------------------------------------------------|
438 | * Bio::DB::HIV::HIVQueryHelper - XML::Simple |
439 | * Bio::DB::Query::HIVQuery - XML::Simple |
440 | * Bio::Tools::EUtilities - XML::Simple |
441 ==============================================================================
442 ==============================================================================
443 | Distribution | Module used - Description | Min. ver. |
444 |---------------------------+--------------------------------------+-----------|
445 | XML-Twig | * XML::Twig - A module for easy | None |
446 | | processing of XML | |
447 |==============================================================================|
448 | Used by: |
449 |------------------------------------------------------------------------------|
450 | * Bio::DB::Biblio::eutils - XML::Twig |
451 | * Bio::DB::Taxonomy::entrez - XML::Twig |
452 | * Bio::Variation::IO::xml - XML::Twig |
453 ==============================================================================
454 ==============================================================================
455 | Distribution | Module used - Description | Min. ver. |
456 |---------------------------+--------------------------------------+-----------|
457 | XML-Writer | * XML::Writer - Module for writing | 0.4 |
458 | | XML documents | |
459 |==============================================================================|
460 | Used by: |
461 |------------------------------------------------------------------------------|
462 | * Bio::SearchIO::Writer::BSMLResultWriter - XML::Writer |
463 | * Bio::SeqIO::agave - XML::Writer |
464 | * Bio::SeqIO::chadoxml - XML::Writer |
465 | * Bio::SeqIO::tinyseq - XML::Writer |
466 | * Bio::SeqIO::game::gameWriter - XML::Writer |
467 | * Bio::Variation::IO::xml - XML::Writer |
468 ==============================================================================
469 ==============================================================================
470 | Distribution | Module used - Description | Min. ver. |
471 |---------------------------+--------------------------------------+-----------|
472 | bioperl-ext | * Bio::Ext::Align - NA | None |
473 | | * Bio::SeqIO::staden::read - NA | |
474 |==============================================================================|
475 | Used by: |
476 |------------------------------------------------------------------------------|
477 | * Bio::SearchDist - Bio::Ext::Align |
478 | * Bio::Tools::AlignFactory - Bio::Ext::Align |
479 | * Bio::Tools::dpAlign - Bio::Ext::Align |
480 | * Bio::Tools::pSW - Bio::Ext::Align |
481 | * Bio::SeqIO::abi - Bio::SeqIO::staden::read |
482 | * Bio::SeqIO::alf - Bio::SeqIO::staden::read |
483 | * Bio::SeqIO::ctf - Bio::SeqIO::staden::read |
484 | * Bio::SeqIO::exp - Bio::SeqIO::staden::read |
485 | * Bio::SeqIO::pln - Bio::SeqIO::staden::read |
486 | * Bio::SeqIO::ztr - Bio::SeqIO::staden::read |
487 ==============================================================================
488 ==============================================================================
489 | Distribution | Module used - Description | Min. ver. |
490 |---------------------------+--------------------------------------+-----------|
491 | libwww-perl | * HTTP::Request - Class | 5.64 |
492 | | encapsulating HTTP Requests | |
493 | | * HTTP::Request::Common - Functions | |
494 | | that generate HTTP::Requests | |
495 | | * HTTP::Response - Class | |
496 | | encapsulating HTTP Responses | |
497 | | * LWP - Libwww-perl | |
498 | | * LWP::Simple - Simple procedural | |
499 | | interface to libwww-perl | |
500 | | * LWP::UserAgent - A WWW UserAgent | |
501 | | class | |
502 |==============================================================================|
503 | Used by: |
504 |------------------------------------------------------------------------------|
505 | * Bio::Tools::EUtilities::EUtilParameters - HTTP::Request |
506 | * Bio::DB::DBFetch - HTTP::Request::Common |
507 | * Bio::DB::HIV - HTTP::Request::Common |
508 | * Bio::DB::NCBIHelper - HTTP::Request::Common |
509 | * Bio::DB::SwissProt - HTTP::Request::Common |
510 | * Bio::DB::WebDBSeqI - HTTP::Request::Common |
511 | * Bio::DB::Query::WebQuery - HTTP::Request::Common |
512 | * Bio::Tools::Run::RemoteBlast - HTTP::Request::Common |
513 | * Bio::DB::WebDBSeqI - HTTP::Response |
514 | * Bio::Tools::Protparam - LWP |
515 | * Bio::Tools::Run::RemoteBlast - LWP |
516 | * Bio::DB::Biblio::eutils - LWP::Simple |
517 | * Bio::Root::IO - LWP::Simple |
518 | * Bio::DB::GenericWebAgent - LWP::UserAgent |
519 | * Bio::DB::MeSH - LWP::UserAgent |
520 | * Bio::DB::WebDBSeqI - LWP::UserAgent |
521 | * Bio::DB::Query::WebQuery - LWP::UserAgent |
522 | * Bio::Root::Build - LWP::UserAgent |
523 ==============================================================================
524 ==============================================================================
525 | Distribution | Module used - Description | Min. ver. |
526 |---------------------------+--------------------------------------+-----------|
527 | libxml-perl | * XML::Parser::PerlSAX - NA | None |
528 |==============================================================================|
529 | Used by: |
530 |------------------------------------------------------------------------------|
531 | * Bio::OntologyIO::InterProParser - XML::Parser::PerlSAX |
532 | * Bio::SeqIO::tinyseq - XML::Parser::PerlSAX |
533 | * Bio::SeqIO::game::gameSubs - XML::Parser::PerlSAX |
534 ==============================================================================
535 ==============================================================================
536 | Distribution | Module used - Description | Min. ver. |
537 |---------------------------+--------------------------------------+-----------|
538 | mod_perl | * Apache2::SubProcess - NA | None |
539 |==============================================================================|
540 | Used by: |
541 |------------------------------------------------------------------------------|
542 | * Bio::DB::WebDBSeqI - Apache2::SubProcess |
543 ==============================================================================