MANIFEST

   1 MANIFEST
   2 Makefile.PL
   3 README
   4 Changes
   5 PLATFORMS
   6 bioperl.pod
   7 Bio/Parse.pm
   8 Bio/Root/Err.pm
   9 Bio/Root/Global.pm
  10 Bio/Root/IOManager.pm
  11 Bio/Root/Object.pm
  12 Bio/Root/Utilities.pm
  13 Bio/Root/Vector.pm
  14 Bio/Root/Xref.pm
  15 Bio/Seq.pm
  16 Bio/SimpleAlign.pm
  17 Bio/Tools/AlignFactory.pm
  18 Bio/Tools/Blast.pm
  19 Bio/Tools/Blast/HSP.pm
  20 Bio/Tools/Blast/HTML.pm
  21 Bio/Tools/Blast/Run/LocalBlast.pm
  22 Bio/Tools/Blast/Run/Makefile.PL
  23 Bio/Tools/Blast/Run/Webblast.pm
  24 Bio/Tools/Blast/Run/postclient.pl
  25 Bio/Tools/Blast/Sbjct.pm
  26 Bio/Tools/Fasta.pm
  27 Bio/Tools/SeqAnal.pm
  28 Bio/Tools/WWW.pm
  29 Bio/Tools/pSW.pm
  30 Bio/Tools/RestrictionEnzyme.pm
  31 t/Seq.t
  32 t/SimpleAlign.t
  33 t/Blast.t
  34 t/HTML.t
  35 t/Seq.t
  36 t/WWW.t
  37 t/Fasta.t
  38 t/RestrictionEnzyme.t
  39 t/SeqAnal.t
  40 t/HSP.t
  41 t/Sbjct.t
  42 t/SimpleAlign.t
  43 examples/restriction.pl
  44 examples/rev_and_trans.pl
  45 examples/root_object/Bar.pm
  46 examples/root_object/Foo.pm
  47 examples/root_object/Outer.pm
  48 examples/root_object/error.out
  49 examples/root_object/error.pl
  50 examples/root_object/filehandle.out
  51 examples/root_object/filehandle.pl
  52 examples/root_object/read.pl
  53 examples/root_object/read.test
  54 examples/root_object/read.test2
  55 examples/root_object/read.test3
  56 Compile/SW/Makefile.PL
  57 Compile/SW/bp_sw.pm
  58 Compile/SW/bp_sw.xs
  59 Compile/SW/libs/aln.c
  60 Compile/SW/libs/aln.h
  61 Compile/SW/libs/alnconvert.c
  62 Compile/SW/libs/alnconvert.h
  63 Compile/SW/libs/alnrange.c
  64 Compile/SW/libs/alnrange.h
  65 Compile/SW/libs/asciibtcanvas.c
  66 Compile/SW/libs/asciibtcanvas.h
  67 Compile/SW/libs/basematrix.c
  68 Compile/SW/libs/basematrix.h
  69 Compile/SW/libs/btcanvas.c
  70 Compile/SW/libs/btcanvas.h
  71 Compile/SW/libs/cdna.c
  72 Compile/SW/libs/cdna.h
  73 Compile/SW/libs/cdnadb.c
  74 Compile/SW/libs/cdnadb.h
  75 Compile/SW/libs/codon.c
  76 Compile/SW/libs/codon.h
  77 Compile/SW/libs/codonmapper.c
  78 Compile/SW/libs/codonmapper.h
  79 Compile/SW/libs/codonmatrix.c
  80 Compile/SW/libs/codonmatrix.h
  81 Compile/SW/libs/commandline.c
  82 Compile/SW/libs/commandline.h
  83 Compile/SW/libs/complexconsensi.c
  84 Compile/SW/libs/complexconsensi.h
  85 Compile/SW/libs/complexevalset.c
  86 Compile/SW/libs/complexevalset.h
  87 Compile/SW/libs/complexsequence.c
  88 Compile/SW/libs/complexsequence.h
  89 Compile/SW/libs/compmat.c
  90 Compile/SW/libs/compmat.h
  91 Compile/SW/libs/database.h
  92 Compile/SW/libs/dna.c
  93 Compile/SW/libs/dna.h
  94 Compile/SW/libs/dnamatrix.c
  95 Compile/SW/libs/dnamatrix.h
  96 Compile/SW/libs/dpenvelope.c
  97 Compile/SW/libs/dpenvelope.h
  98 Compile/SW/libs/dyna.h
  99 Compile/SW/libs/dynlibcross.c
 100 Compile/SW/libs/dynlibcross.h
 101 Compile/SW/libs/embl.c
 102 Compile/SW/libs/embl.h
 103 Compile/SW/libs/gene.c
 104 Compile/SW/libs/gene.h
 105 Compile/SW/libs/genomic.c
 106 Compile/SW/libs/genomic.h
 107 Compile/SW/libs/genomicdb.c
 108 Compile/SW/libs/genomicdb.h
 109 Compile/SW/libs/genomicregion.c
 110 Compile/SW/libs/genomicregion.h
 111 Compile/SW/libs/histogram.c
 112 Compile/SW/libs/histogram.h
 113 Compile/SW/libs/hscore.c
 114 Compile/SW/libs/hscore.h
 115 Compile/SW/libs/linesubs.c
 116 Compile/SW/libs/linesubs.h
 117 Compile/SW/libs/makefile
 118 Compile/SW/libs/packaln.c
 119 Compile/SW/libs/packaln.h
 120 Compile/SW/libs/probability.c
 121 Compile/SW/libs/probability.h
 122 Compile/SW/libs/protein.c
 123 Compile/SW/libs/protein.h
 124 Compile/SW/libs/proteindb.c
 125 Compile/SW/libs/proteindb.h
 126 Compile/SW/libs/proteinsw.c
 127 Compile/SW/libs/proteinsw.h
 128 Compile/SW/libs/seqaligndisplay.c
 129 Compile/SW/libs/seqaligndisplay.h
 130 Compile/SW/libs/sequence.c
 131 Compile/SW/libs/sequence.h
 132 Compile/SW/libs/sequencedb.c
 133 Compile/SW/libs/sequencedb.h
 134 Compile/SW/libs/sw.h
 135 Compile/SW/libs/sw_wrap.c
 136 Compile/SW/libs/sw_wrap.h
 137 Compile/SW/libs/transcript.c
 138 Compile/SW/libs/transcript.h
 139 Compile/SW/libs/translation.c
 140 Compile/SW/libs/translation.h
 141 Compile/SW/libs/wisebase.h
 142 Compile/SW/libs/wiseconfig.c
 143 Compile/SW/libs/wiseconfig.h
 144 Compile/SW/libs/wiseerror.c
 145 Compile/SW/libs/wiseerror.h
 146 Compile/SW/libs/wisefile.c
 147 Compile/SW/libs/wisefile.h
 148 Compile/SW/libs/wisememman.c
 149 Compile/SW/libs/wisememman.h
 150 Compile/SW/libs/wiseoverlay.c
 151 Compile/SW/libs/wiseoverlay.h
 152 Compile/SW/libs/wiserandom.c
 153 Compile/SW/libs/wiserandom.h
 154 Compile/SW/libs/wisestring.c
 155 Compile/SW/libs/wisestring.h
 156 Compile/SW/libs/wisetime.c
 157 Compile/SW/libs/wisetime.h
 158 Compile/SW/test.pl
 159 Compile/SW/typemap
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