MANIFEST

   1 # Bioperl Manifest List
   2 # $Id: MANIFEST,v 1.12 1999-04-06 16:57:36 birney Exp $
   3 #
   4 MANIFEST
   5 Makefile.PL
   6 README
   7 Changes
   8 PLATFORMS
   9 bioperl.pod
  10 Bio/Parse.pm
  11 Bio/Root/Err.pm
  12 Bio/Root/Global.pm
  13 Bio/Root/IOManager.pm
  14 Bio/Root/Object.pm
  15 Bio/Root/Utilities.pm
  16 Bio/Root/Vector.pm
  17 Bio/Root/Xref.pm
  18 Bio/Seq.pm
  19 Bio/SearchDist.pm
  20 Bio/SimpleAlign.pm
  21 Bio/Tools/AlignFactory.pm
  22 Bio/Tools/Blast.pm
  23 Bio/Tools/Blast/HSP.pm
  24 Bio/Tools/Blast/HTML.pm
  25 Bio/Tools/Blast/Run/LocalBlast.pm
  26 Bio/Tools/Blast/Run/Makefile.PL
  27 Bio/Tools/Blast/Run/Webblast.pm
  28 Bio/Tools/Blast/Run/postclient.pl
  29 Bio/Tools/Blast/Sbjct.pm
  30 Bio/Tools/Fasta.pm
  31 Bio/Tools/SeqAnal.pm
  32 Bio/Tools/WWW.pm
  33 Bio/Tools/pSW.pm
  34 Bio/Tools/Sigcleave.pm
  35 Bio/Tools/RestrictionEnzyme.pm
  36 Bio/Index/Abstract.pm
  37 Bio/Index/Fasta.pm
  38 Bio/Index/EMBL.pm
  39 Bio/Index/SwissPfam.pm
  40 Bio/DB/BioSeqI.pm
  41 Bio/DB/GenBank.pm
  42 Bio/DB/GenPept.pm
  43 Bio/SeqIO.pm
  44 Bio/SeqIO/Handler.pm
  45 Bio/SeqIO/EMBL.pm
  46 Bio/SeqIO/Fasta.pm
  47 Bio/SeqIO/Raw.pm
  48 Bio/SeqIO/GCG.pm
  49 t/Seq.t
  50 t/SimpleAlign.t
  51 t/Blast.t
  52 t/HTML.t
  53 t/Seq.t
  54 t/WWW.t
  55 t/Fasta.t
  56 t/RestrictionEnzyme.t
  57 t/Sigcleave.t
  58 t/SeqAnal.t
  59 t/HSP.t
  60 t/Sbjct.t
  61 t/SimpleAlign.t
  62 t/SeqIO.t
  63 t/DB.t
  64 t/Index.t
  65 t/test.fasta
  66 t/test.raw
  67 t/test.gcg
  68 t/test.pfam
  69 t/swisspfam.data
  70 scripts/bpindex.pl
  71 scripts/bpfetch.pl
  72 examples/restriction.pl
  73 examples/rev_and_trans.pl
  74 examples/root_object/Bar.pm
  75 examples/root_object/Foo.pm
  76 examples/root_object/Outer.pm
  77 examples/root_object/error.out
  78 examples/root_object/error.pl
  79 examples/root_object/filehandle.out
  80 examples/root_object/filehandle.pl
  81 examples/root_object/read.pl
  82 examples/root_object/read.test
  83 examples/root_object/read.test2
  84 examples/root_object/read.test3
  85 Compile/SW/Makefile.PL
  86 Compile/SW/bp_sw.pm
  87 Compile/SW/bp_sw.xs
  88 Compile/SW/libs/aln.c
  89 Compile/SW/libs/aln.h
  90 Compile/SW/libs/alnconvert.c
  91 Compile/SW/libs/alnconvert.h
  92 Compile/SW/libs/alnrange.c
  93 Compile/SW/libs/alnrange.h
  94 Compile/SW/libs/asciibtcanvas.c
  95 Compile/SW/libs/asciibtcanvas.h
  96 Compile/SW/libs/basematrix.c
  97 Compile/SW/libs/basematrix.h
  98 Compile/SW/libs/btcanvas.c
  99 Compile/SW/libs/btcanvas.h
 100 Compile/SW/libs/codon.c
 101 Compile/SW/libs/codon.h
 102 Compile/SW/libs/commandline.c
 103 Compile/SW/libs/commandline.h
 104 Compile/SW/libs/complexconsensi.c
 105 Compile/SW/libs/complexconsensi.h
 106 Compile/SW/libs/complexevalset.c
 107 Compile/SW/libs/complexevalset.h
 108 Compile/SW/libs/complexsequence.c
 109 Compile/SW/libs/complexsequence.h
 110 Compile/SW/libs/compmat.c
 111 Compile/SW/libs/compmat.h
 112 Compile/SW/libs/database.h
 113 Compile/SW/libs/dna.c
 114 Compile/SW/libs/dna.h
 115 Compile/SW/libs/dnamatrix.c
 116 Compile/SW/libs/dnamatrix.h
 117 Compile/SW/libs/dpenvelope.c
 118 Compile/SW/libs/dpenvelope.h
 119 Compile/SW/libs/dyna.h
 120 Compile/SW/libs/dynlibcross.c
 121 Compile/SW/libs/dynlibcross.h
 122 Compile/SW/libs/histogram.c
 123 Compile/SW/libs/histogram.h
 124 Compile/SW/libs/hscore.c
 125 Compile/SW/libs/hscore.h
 126 Compile/SW/libs/linesubs.c
 127 Compile/SW/libs/linesubs.h
 128 Compile/SW/libs/makefile
 129 Compile/SW/libs/packaln.c
 130 Compile/SW/libs/packaln.h
 131 Compile/SW/libs/probability.c
 132 Compile/SW/libs/probability.h
 133 Compile/SW/libs/protein.c
 134 Compile/SW/libs/protein.h
 135 Compile/SW/libs/proteindb.c
 136 Compile/SW/libs/proteindb.h
 137 Compile/SW/libs/proteinsw.c
 138 Compile/SW/libs/proteinsw.h
 139 Compile/SW/libs/seqaligndisplay.c
 140 Compile/SW/libs/seqaligndisplay.h
 141 Compile/SW/libs/sequence.c
 142 Compile/SW/libs/sequence.h
 143 Compile/SW/libs/sequencedb.c
 144 Compile/SW/libs/sequencedb.h
 145 Compile/SW/libs/sw.h
 146 Compile/SW/libs/sw_wrap.c
 147 Compile/SW/libs/sw_wrap.h
 148 Compile/SW/libs/wisebase.h
 149 Compile/SW/libs/wiseconfig.c
 150 Compile/SW/libs/wiseconfig.h
 151 Compile/SW/libs/wiseerror.c
 152 Compile/SW/libs/wiseerror.h
 153 Compile/SW/libs/wisefile.c
 154 Compile/SW/libs/wisefile.h
 155 Compile/SW/libs/wisememman.c
 156 Compile/SW/libs/wisememman.h
 157 Compile/SW/libs/wiseoverlay.c
 158 Compile/SW/libs/wiseoverlay.h
 159 Compile/SW/libs/wiserandom.c
 160 Compile/SW/libs/wiserandom.h
 161 Compile/SW/libs/wisestring.c
 162 Compile/SW/libs/wisestring.h
 163 Compile/SW/libs/wisetime.c
 164 Compile/SW/libs/wisetime.h
 165 Compile/SW/test.pl
 166 Compile/SW/typemap
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