maint: remove Travis stuff which has been replaced with Github actions (#325)
[bioperl-live.git] / t / data / test1.wublastp
blob73325b9ad83d3d0aab25881bce904753b0289280
1 BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
3 Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
4 All Rights Reserved.
6 Reference:  Gish, W. (1996-2006) http://blast.wustl.edu
8 Query=  000086_1606_1131 this is your fake desc
9         (21 letters)
11 Database:  test_orfs.fa
12            307 sequences; 9460 total letters.
13 Searching....10....20....30....40....50....60....70....80....90....100% done
15                                                                      Smallest
16                                                                        Sum
17                                                               High  Probability
18 Sequences producing High-scoring Segment Pairs:              Score  P(N)      N
20 000086_1606_1131 [64 - 2] (REVERSE SENSE) length=64 uaccn...   128  1.7e-11   1
21 000269_0423_3271 [1 - 78] length=78 uaccno=ER8QEOW01BBHO5       76  5.4e-06   1
22 000780_0082_2331 [1 - 78] length=78 uaccno=ER8QEOW01AHI8T       75  6.9e-06   1
25 >000086_1606_1131 [64 - 2] (REVERSE SENSE) length=64 uaccno=ER8QEOW01D7AWT
26         Length = 21
28  Score = 128 (50.1 bits), Expect = 1.7e-11, P = 1.7e-11, Group = 1
29  Identities = 21/21 (100%), Positives = 21/21 (100%)
30  Links = (1)
32 Query:     1 THITHTYTHITHTSHTHHTHR 21
33              THITHTYTHITHTSHTHHTHR
34 Sbjct:     1 THITHTYTHITHTSHTHHTHR 21
37 >000269_0423_3271 [1 - 78] length=78 uaccno=ER8QEOW01BBHO5
38         Length = 26
40  Score = 76 (31.8 bits), Expect = 5.4e-06, P = 5.4e-06, Group = 1
41  Identities = 17/22 (77%), Positives = 18/22 (81%)
42  Links = (1)
44 Query:     1 THITHTYTHITHT-SHTH-HTH 20
45              TH THTYTH THT +HTH HTH
46 Sbjct:     2 TH-THTYTH-THTQTHTHAHTH 21
49 >000780_0082_2331 [1 - 78] length=78 uaccno=ER8QEOW01AHI8T
50         Length = 26
52  Score = 75 (31.5 bits), Expect = 6.9e-06, P = 6.9e-06, Group = 1
53  Identities = 17/23 (73%), Positives = 19/23 (82%)
54  Links = (1)
56 Query:     1 THI-THTYTHITHT-SHTH-HTH 20
57              THI THT+TH THT +HTH HTH
58 Sbjct:     2 THIHTHTHTH-THTHTHTHTHTH 23
61 Parameters:
62   B=5
63   V=5
64   E=0.0001
65   links
66   topcomboN=5
68   ctxfactor=1.00
70   Query                        -----  As Used  -----    -----  Computed  ----
71   Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
72    +0      0   BLOSUM62        0.324   0.122   0.430    same    same    same
73                Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
75   Query
76   Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
77    +0      0       21        21   9.7e-05  71 3  11 22  0.40    21
78                                                     29  0.44    22
81 Statistics:
83   Database:  test_orfs.fa
84    Title:  test_orfs.fa
85    Posted:  11:50:04 AM CEST May 14, 2008
86    Created:  11:50:04 AM CEST May 14, 2008
87    Format:  XDF-1
88    # of letters in database:  9460
89    # of sequences in database:  307
90    # of database sequences satisfying E:  3
91   No. of states in DFA:  208 (22 KB)
92   Total size of DFA:  39 KB (2056 KB)
93   Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
94   No. of threads or processors used:  2
95   Search cpu time:  0.00u 0.02s 0.02t   Elapsed:  00:00:00
96   Total cpu time:  0.00u 0.02s 0.02t   Elapsed:  00:00:00
97   Start:  Wed May 21 22:50:32 2008   End:  Wed May 21 22:50:32 2008