1 # -*-Perl-*- Test Harness script for Bioperl
9 test_begin(-tests => 11);
11 use_ok('Bio::PrimarySeq');
12 use_ok('Bio::Tools::OddCodes');
15 my ($seqobj, $oddcode_obj);
17 $seqobj = Bio::PrimarySeq->new('-seq'=>'ABCDEFGHIJKLMNOPQRSTUVWXYZ',
18 '-alphabet'=>'protein',
20 $oddcode_obj = Bio::Tools::OddCodes->new('-seq' => $seqobj);
22 isa_ok $oddcode_obj, 'Bio::Tools::OddCodes';
24 is ${$oddcode_obj->structural()}, 'ABAEEIAEIJEIIEOAEEAAUIAXAZ';
25 is ${$oddcode_obj->chemical()}, 'LBSAARLCLJCLSMOIMCHHULRXRZ';
26 is ${$oddcode_obj->functional()}, 'HBPAAHPCHJCHHPOHPCPPUHHXPZ';
27 is ${$oddcode_obj->charge()}, 'NBNAANNCNJCNNNONNCNNUNNXNZ';
28 is ${$oddcode_obj->hydrophobic()}, 'IBOOOIOOIJOIIOOIOOOOUIIXOZ';
29 is ${$oddcode_obj->Dayhoff()}, 'CBADDGCEFJEFFDOCDECCUFGXGZ';
30 is ${$oddcode_obj->Sneath()}, 'CBEFFHCHAJGADDOCDGEEUAHXHZ';
31 is ${$oddcode_obj->Stanfel()}, 'ABACCDAEAJEAACOACEAAUADXDZ';