fix deprecated usage warnings for perl 5.16
[bioperl-live.git] / t / data / adh.mb_tree.nexus
blob4b5c3f4b93cf60f8b6c64351741db05c9db84845
1 #NEXUS
2 begin trees;
3    translate
4      17 d.tsacasi,
5      22 d.texana,
6      54 z.tuberculatus,
7      14 d.orena,
8      18 d.crassifemur,
9      48 d.planitibia,
10      19 d.montana,
11      43 d.affinidisjuncta,
12      49 d.heteroneura,
13      25 d.borealis,
14      37 d.mulleri_2,
15      53 d.hawaiiensis,
16       7 d.madeirensis,
17       9 d.lebanonensis,
18      12 d.mauritiana,
19      36 d.mulleri_1,
20      32 d.hydei_1,
21      21 d.buzzatii_2,
22      52 d.mayaguana,
23      38 d.navojoa,
24      24 d.lacicola,
25      39 d.virilis_1,
26      28 sc.albovittata,
27      23 d.lummei,
28      10 d.melanogaster,
29      16 d.yakuba,
30      42 d.grimshawi,
31      31 d.arizonae_2,
32      44 d.nigra,
33      45 d.mimica,
34       8 d.willistoni,
35      33 d.hydei_2,
36      35 d.mojavensis_2,
37       4 d.miranda,
38       5 d.ambigua,
39      13 d.teissieri,
40       2 d.pseudoobscura1,
41      47 d.picticornis,
42      41 d.silvestris,
43       6 d.subobscura,
44      34 d.mojavensis_1,
45      50 d.differens,
46      46 d.adiastola,
47      51 d.wheeleri,
48      15 d.sechellia,
49      11 d.simulans,
50      26 d.flavomontana,
51      40 d.virilis_2,
52      27 d.americana,
53      20 d.buzzatii_1,
54      29 d.immigrans,
55       3 d.pseudoobscura2,
56      30 d.mettleri,
57       1 d.persimilis;
58    tree rep.1 = (((22:0.157963,54:0.125585):0.018579,14:0.027001):0.134996,(17:0.023317,((18:0.172811,(48:0.153690,(19:0.120099,((43:0.049425,49:0.080196):0.145571,(((25:0.014888,37:0.157056):0.020382,53:0.082720):0.110316,((((7:0.039223,9:0.129119):0.180479,12:0.167484):0.107546,(36:0.143350,32:0.037119):0.126282):0.083525,((21:0.150729,(52:0.112407,(38:0.005115,(24:0.127020,(39:0.083231,(28:0.121717,23:0.086451):0.112299):0.008499):0.120916):0.119008):0.115839):0.082094,(10:0.150963,(16:0.040991,(42:0.138176,((31:0.034408,44:0.128276):0.043900,(45:0.175700,(((8:0.047586,33:0.158794):0.065235,35:0.048337):0.029596,(4:0.000947,(5:0.050439,(13:0.174097,2:0.081204):0.149235):0.166073):0.094284):0.158802):0.012646):0.018672):0.133240):0.177054):0.014718):0.017657):0.032351):0.009559):0.070867):0.105545):0.050691):0.031521,(47:0.091158,(41:0.111627,(6:0.011247,(34:0.012016,(50:0.172260,(46:0.000766,((51:0.109803,(15:0.160931,(11:0.071819,(((26:0.075067,40:0.157040):0.113187,27:0.173541):0.018777,(20:0.074769,(29:0.074750,3:0.122801):0.079648):0.059964):0.053481):0.089055):0.139545):0.064332,30:0.012602):0.001813):0.031837):0.116060):0.160691):0.045201):0.001897):0.164978):0.077134):0.031565,1:0.014800);
59    tree rep.100 = (((22:0.157963,54:0.125585):0.065002,(17:0.038858,((18:0.172811,(48:0.153690,(19:0.076261,((43:0.049425,49:0.080196):0.145571,(((25:0.014888,37:0.157056):0.104016,53:0.082720):0.027222,((36:0.139635,32:0.037119):0.204371,((21:0.150729,((24:0.127020,(39:0.083231,(28:0.121717,23:0.075231):0.112007):0.007485):0.120916,(38:0.117588,52:0.116324):0.019183):0.004655):0.030382,(10:0.150963,(16:0.050516,(42:0.138176,((31:0.034408,44:0.128276):0.043900,(45:0.175700,(((8:0.045541,(5:0.050439,(4:0.000947,(13:0.174097,2:0.081204):0.096513):0.041065):0.337782):0.068564,33:0.158794):0.069085,35:0.046885):0.062082):0.012646):0.019251):0.133240):0.129116):0.098729):0.063630):0.031512):0.008868):0.069030):0.102165):0.049377):0.030704,(47:0.091158,(41:0.111627,((6:0.011247,(34:0.047703,(46:0.000766,(50:0.081921,((51:0.042867,30:0.071396):0.059062,(15:0.160931,(11:0.071819,(((26:0.062302,27:0.173541):0.008927,40:0.157040):0.125217,(20:0.074769,(29:0.074750,3:0.174294):0.044187):0.002981):0.111490):0.086250):0.036449):0.181165):0.074995):0.116060):0.117958):0.013739,((7:0.222720,12:0.057596):0.112188,9:0.129119):0.107546):0.028495):0.001848):0.160703):0.070932):0.017780):0.030528,14:0.027001,1:0.076733);
60    tree rep.200 = (4:0.140083,(10:0.046455,(((44:0.303242,3:0.046149):0.007085,(12:0.264171,(39:0.010329,(28:0.010442,((((13:0.164415,32:0.085013):0.012181,36:0.088070):0.239645,((47:0.045731,42:0.055141):0.028604,(43:0.037115,(53:0.094489,(45:0.170989,17:0.084207):0.037785):0.081498):0.028893):0.075241):0.031188,(((11:0.053767,15:0.007988):0.365837,41:0.009924):0.106798,(((14:0.020334,(16:0.003141,(52:0.009450,(31:0.065281,9:0.081911):0.025622):0.205320):0.130518):0.130135,((((20:0.069017,21:0.001805):0.095042,((22:0.000992,27:0.055347):0.028541,((33:0.048426,(37:0.055803,((((5:0.197727,35:0.126381):0.024362,7:0.110282):0.037632,48:0.012853):0.004593,49:0.069144):0.048461):0.043626):0.044665,40:0.137528):0.041607):0.174554):0.131272,25:0.119919):0.026458,(19:0.043106,(24:0.036835,26:0.141457):0.001981):0.023511):0.045316):0.004905,(30:0.164116,23:0.139063):0.051306):0.045154):0.027607):0.184355):0.092816):0.111078):0.017810):0.011860,(51:0.124000,(((((((6:0.036025,(8:0.044154,18:0.131440):0.010261):0.051278,50:0.092479):0.015989,(54:0.138965,29:0.038900):0.117072):0.019978,2:0.066155):0.055828,34:0.084369):0.007028,38:0.132118):0.116475,46:0.095168):0.081231):0.099059):0.057599):0.092299,1:0.155488);
61    tree rep.300 = ((((41:0.074469,(47:0.070075,(18:0.170195,(48:0.216005,(19:0.155284,((43:0.049425,49:0.080196):0.153125,(((25:0.078322,37:0.160449):0.035496,53:0.112645):0.008125,((36:0.139635,32:0.052845):0.168416,(((24:0.127020,(28:0.121717,(39:0.083231,23:0.078065):0.115864):0.008696):0.052982,((42:0.138176,((31:0.034408,44:0.124188):0.013267,(45:0.117313,(((8:0.045541,(4:0.000947,(5:0.086055,(13:0.209025,2:0.081204):0.024175):0.011399):0.337782):0.105831,33:0.158794):0.069085,35:0.069308):0.031964):0.003124):0.025722):0.259725,(10:0.042425,16:0.110297):0.039735):0.191014):0.068713,(21:0.135116,(38:0.117588,52:0.111942):0.022356):0.011332):0.059385):0.037720):0.000909):0.014457):0.003132):0.007537):0.005212):0.020328):0.031939,(9:0.157964,(6:0.071972,((7:0.222720,12:0.057596):0.020190,(34:0.039949,(((50:0.016105,46:0.110602):0.081029,(((26:0.056793,(27:0.064620,40:0.125765):0.033330):0.043797,(20:0.074769,(29:0.074750,3:0.181634):0.046047):0.017717):0.027723,(11:0.106754,15:0.040884):0.191869):0.021053):0.006087,(51:0.042867,30:0.071396):0.058507):0.170142):0.250851):0.044118):0.046820):0.067374):0.068167,(22:0.158868,54:0.125585):0.065002):0.043176,(17:0.044466,14:0.016232):0.030029,1:0.254144);
62    tree rep.400 = (((3:0.054881,((12:0.149557,(((((36:0.011361,32:0.091895):0.227251,13:0.164415):0.072047,((47:0.045731,42:0.045457):0.028604,(45:0.170989,(43:0.037115,(53:0.094489,17:0.151875):0.010276):0.036399):0.002994):0.069442):0.023635,(((11:0.053767,15:0.007291):0.341002,41:0.082941):0.018099,(((9:0.107703,(52:0.022211,31:0.065281):0.129209):0.052897,(14:0.052534,16:0.002995):0.119894):0.152800,(((37:0.055803,(33:0.048426,((49:0.069144,48:0.018638):0.011130,((5:0.203993,7:0.107996):0.003241,35:0.116375):0.033522):0.046802):0.027947):0.066914,(40:0.005572,(22:0.000992,27:0.055347):0.074961):0.262467):0.011952,(((26:0.044133,(19:0.021968,24:0.034463):0.004692):0.090414,25:0.110170):0.081060,((20:0.069017,21:0.001768):0.142084,(30:0.164116,23:0.139063):0.039907):0.003682):0.029602):0.039057):0.033620):0.024068):0.165826,(28:0.013535,39:0.149488):0.042895):0.097397):0.002867,44:0.296540):0.111579):0.011860,(51:0.124000,(((((2:0.086296,(54:0.138965,29:0.046449):0.131077):0.002123,((6:0.036862,(8:0.044154,18:0.134018):0.044121):0.029918,50:0.100654):0.002909):0.054425,34:0.064165):0.004946,38:0.012104):0.078140,46:0.095168):0.024181):0.112252):0.007356,(10:0.095486,4:0.148723):0.005218,1:0.069766);
63    tree rep.500 = (((3:0.033638,(46:0.095168,(((((2:0.086296,(54:0.138965,29:0.046449):0.131077):0.002123,((6:0.036862,(8:0.044154,18:0.134018):0.075578):0.033011,50:0.104237):0.001729):0.055197,34:0.064165):0.068011,38:0.012104):0.033603,51:0.068707):0.046721):0.129746):0.016252,((44:0.300154,(28:0.013535,((((((11:0.053767,15:0.007291):0.341002,41:0.102068):0.016061,(((9:0.074116,(14:0.052534,16:0.002995):0.119929):0.086773,(52:0.022211,31:0.026627):0.084519):0.050469,(((37:0.080049,(33:0.086746,(35:0.116375,((5:0.203993,7:0.107996):0.038960,(49:0.069144,48:0.018638):0.011130):0.030953):0.018647):0.012069):0.016175,(40:0.005572,(22:0.003777,27:0.055347):0.065961):0.240988):0.011172,((20:0.069017,21:0.001768):0.142084,(23:0.139063,(30:0.145755,((26:0.044133,(19:0.021968,24:0.034463):0.004692):0.090414,25:0.110170):0.120926):0.016964):0.000632):0.034642):0.047233):0.001381):0.018795,((47:0.046981,(42:0.008165,((53:0.060089,43:0.027814):0.025023,17:0.151875):0.025364):0.041768):0.031422,45:0.085737):0.049032):0.030224,((36:0.010390,32:0.091895):0.227251,13:0.348171):0.010029):0.007993,39:0.116947):0.096577):0.017004):0.154726,12:0.149557):0.028553):0.018993,(10:0.095486,4:0.003046):0.005218,1:0.009243);
64    tree rep.600 = (((10:0.095486,4:0.003046):0.005343,3:0.021494):0.009169,(((((((2:0.086296,(54:0.138965,29:0.046449):0.131077):0.002123,((6:0.089047,(8:0.044154,18:0.128126):0.075578):0.018450,50:0.104237):0.001729):0.055197,34:0.111462):0.032442,38:0.011793):0.036585,51:0.040738):0.061847,(46:0.095789,((((36:0.010390,32:0.091895):0.227251,(39:0.103153,13:0.335504):0.007758):0.003709,((((47:0.046981,(42:0.008165,((53:0.057021,43:0.027814):0.029252,17:0.151875):0.018562):0.041768):0.029268,45:0.085737):0.078836,(((((37:0.080049,(35:0.116375,(33:0.086746,((5:0.203993,7:0.107996):0.036763,(49:0.069144,48:0.010749):0.027480):0.053627):0.010414):0.002045):0.014092,(40:0.005572,(22:0.003777,27:0.055347):0.065961):0.240988):0.013061,((20:0.069017,21:0.001768):0.139885,(30:0.145755,(23:0.074823,((26:0.038522,(19:0.020894,24:0.034463):0.004692):0.007915,25:0.110170):0.103839):0.021174):0.058565):0.059773):0.038037,(52:0.022211,31:0.026627):0.037033):0.068284,(9:0.137424,(14:0.052534,16:0.002594):0.077089):0.080195):0.023779):0.009356,((11:0.053767,15:0.007291):0.341002,41:0.102068):0.016061):0.015006):0.096982,(28:0.029431,44:0.300154):0.111298):0.065358):0.013070):0.103558,12:0.149557):0.021459,1:0.010304);
65    tree rep.700 = (((10:0.095486,4:0.003046):0.001620,(((((((2:0.086296,(54:0.138965,29:0.046449):0.131077):0.002123,((6:0.089047,(8:0.044154,18:0.128126):0.075578):0.018450,50:0.104237):0.001729):0.055197,34:0.111462):0.032442,38:0.011793):0.035039,51:0.040738):0.062315,((((36:0.009831,32:0.091895):0.144482,(39:0.099656,13:0.335504):0.007758):0.070347,((((47:0.046981,(42:0.008165,((17:0.151875,43:0.004931):0.021655,53:0.041322):0.054598):0.039002):0.036883,45:0.085737):0.077772,((((((33:0.086746,((5:0.101655,7:0.107996):0.036763,(49:0.069144,48:0.010749):0.029499):0.156790):0.010414,(35:0.057180,37:0.085725):0.060494):0.011283,(40:0.005572,(22:0.003777,27:0.055347):0.065961):0.240988):0.013043,((20:0.069017,21:0.001768):0.139885,((23:0.023018,(24:0.034463,(19:0.016869,(26:0.033856,25:0.110170):0.001843):0.002865):0.102246):0.103048,30:0.145755):0.029617):0.059773):0.034692,(52:0.027299,31:0.026627):0.037033):0.026735,(9:0.137424,(14:0.052534,16:0.002594):0.077089):0.080195):0.023779):0.009923,((11:0.053767,15:0.007291):0.341002,41:0.102068):0.015241):0.016285):0.002109,(46:0.104690,(28:0.117042,44:0.300154):0.090580):0.034915):0.013070):0.123724,12:0.149557):0.028839):0.003483,3:0.007190,1:0.016949);
66    tree rep.800 = (((10:0.095486,4:0.003046):0.001620,(((((((2:0.086296,(54:0.206909,29:0.046449):0.053397):0.025375,((6:0.089047,(8:0.044154,18:0.128126):0.075578):0.018450,50:0.104237):0.001729):0.053655,34:0.111170):0.039514,38:0.011793):0.027790,51:0.040738):0.063963,((((32:0.121633,36:0.009831):0.107936,(39:0.099656,13:0.335504):0.007758):0.055974,((((47:0.046981,(42:0.008165,((17:0.151875,43:0.004931):0.028254,53:0.041322):0.018579):0.064401):0.027425,45:0.075355):0.031943,((((20:0.069017,21:0.001768):0.089403,(52:0.027299,31:0.024214):0.081996):0.018165,((((33:0.086746,((5:0.104794,7:0.107996):0.044540,(49:0.069144,48:0.010749):0.029499):0.154989):0.010414,(35:0.057180,37:0.085725):0.060494):0.011980,(40:0.074830,(22:0.003777,27:0.007992):0.025837):0.286798):0.013043,((23:0.022780,(24:0.001597,(19:0.016600,(26:0.033856,25:0.086776):0.001843):0.023453):0.102246):0.133695,30:0.145755):0.056725):0.005719):0.060348,(9:0.137424,(14:0.052534,16:0.002594):0.077089):0.080195):0.023779):0.009923,((11:0.053767,15:0.007291):0.341002,41:0.102068):0.015241):0.016285):0.001986,(46:0.104690,(28:0.117042,44:0.300154):0.090580):0.034915):0.013070):0.123724,12:0.161895):0.118611):0.012373,3:0.007190,1:0.008078);
67    tree rep.900 = ((((((51:0.040738,38:0.039412):0.030687,((50:0.104237,(2:0.086296,((6:0.089047,(8:0.044154,18:0.128126):0.075578):0.021833,(54:0.206909,29:0.046449):0.046705):0.008497):0.028494):0.081836,34:0.111170):0.007082):0.033001,((((32:0.118685,36:0.082241):0.038003,(39:0.099656,13:0.335504):0.007758):0.056416,((((47:0.046981,(42:0.007482,((17:0.151875,43:0.004931):0.028254,53:0.045698):0.018579):0.020312):0.016615,45:0.075355):0.030191,((((((20:0.069017,21:0.021536):0.068942,(52:0.027299,31:0.024214):0.081996):0.022691,(30:0.154294,(23:0.022780,(24:0.001597,(19:0.016600,(26:0.033856,25:0.086776):0.001843):0.023453):0.102246):0.133695):0.034372):0.022434,(40:0.043656,(27:0.016136,22:0.003553):0.018409):0.041255):0.006726,((33:0.051346,(35:0.057180,37:0.085725):0.060494):0.024317,((5:0.104794,7:0.105982):0.044540,(49:0.069144,48:0.010749):0.086428):0.060317):0.012113):0.068974,(9:0.137424,(14:0.052534,16:0.002594):0.077089):0.080195):0.023779):0.009923,((11:0.053767,15:0.007291):0.341002,41:0.102068):0.008310):0.015474):0.001986,(46:0.104690,(28:0.117042,44:0.300154):0.084854):0.038572):0.006848):0.204873,(10:0.027456,12:0.056298):0.052795):0.211349,4:0.003046):0.013823,3:0.007190,1:0.008078);
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