| blob | 670c85deea6ef1adcc7170d15a4f55c909c21771 |
1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <!-- $Id$ -->
3 <otus id="otus1" xmlns:cdao="http://www.evolutionaryontology.org/cdao/1.0/cdao.owl">
4 <otu id="otu2" label="S. acanthias"/> <!-- Squalus acanthias, spiny dogfish, NCBI 7797 -->
5 <otu id="otu3" label="S. glaucus" typeof="cdao:TU" property="cdao:has_Taxonomy_Reference" resource="http://www.zoobank.org/?urn:lsid:zoobank.org:act:A6AD1B85-C65C-4079-B425-56828418620C" />
6 <otu id="otu4" label="S. cubensis"/> <!-- Cuban dogfish, NCBI 134995 -->
7 <otu id="otu5" label="S. megalops"/> <!-- dogfish, NCBI 335062 -->
8 <otu id="otu6" label="S. grahami"/> <!-- dogfish, NCBI 335029 -->
9 <otu id="otu7" label="S. brevirostris"/> <!-- dogfish, NCBI 436290 -->
10 </otus>
11 <trees id="trees16" otus="otus1">
12 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
13 <node id="node19" root="true"/>
14 <node id="node20" label="S. acanthias" otu="otu2"/>
15 <node id="node21"/>
16 <node id="node22"/>
17 <node id="node27"/>
18 <node id="node23"/>
19 <node id="node26" label="S. megalops" otu="otu5"/>
20 <node id="node28" label="S. grahami" otu="otu6"/>
21 <node id="node29" label="S. brevirostris" otu="otu7"/>
22 <node id="node24" label="S. glaucus" otu="otu3"/>
23 <node id="node25" label="S. cubensis" otu="otu4"/>
24 <edge id="edge20" length="4" source="node19" target="node20"/>
25 <edge id="edge21" length="1" source="node19" target="node21"/>
26 <edge id="edge22" length="1" source="node21" target="node22"/>
27 <edge id="edge27" length="2" source="node21" target="node27"/>
28 <edge id="edge23" length="1" source="node22" target="node23"/>
29 <edge id="edge26" length="2" source="node22" target="node26"/>
30 <edge id="edge28" length="1" source="node27" target="node28"/>
31 <edge id="edge29" length="1" source="node27" target="node29"/>
32 <edge id="edge24" length="1" source="node23" target="node24"/>
33 <edge id="edge25" length="1" source="node23" target="node25"/>
34 </tree>
35 </trees>
36 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
37 <format>
38 <states id="states10">
39 <state id="s1" symbol="0"/>
40 <state id="s2" symbol="1"/>
41 <state id="s3" symbol="2"/>
42 <state id="s4" symbol="3"/>
43 <state id="s5" symbol="4"/>
44 <state id="s6" symbol="5"/>
45 <state id="s7" symbol="6"/>
46 <state id="s8" symbol="7"/>
47 <state id="s9" symbol="8"/>
48 <state id="s10" symbol="9"/>
49 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
50 <uncertain_state_set id="s12" symbol="?">
51 <member state="s1"/>
52 <member state="s2"/>
53 <member state="s3"/>
54 <member state="s4"/>
55 <member state="s5"/>
56 <member state="s6"/>
57 <member state="s7"/>
58 <member state="s8"/>
59 <member state="s9"/>
60 <member state="s10"/>
61 <member state="s11"/>
62 </uncertain_state_set>
63 </states>
64 <char id="c1" states="states10"/>
65 </format>
66 <matrix>
67 <row id="row9" label="S. acanthias" otu="otu2">
68 <cell char="c1" state="s1"/>
69 </row>
70 <row id="row11" label="S. glaucus" otu="otu3">
71 <cell char="c1" state="s3"/>
72 </row>
73 <row id="row12" label="S. cubensis" otu="otu4">
74 <cell char="c1" state="s3"/>
75 </row>
76 <row id="row13" label="S. megalops" otu="otu5">
77 <cell char="c1" state="s1"/>
78 </row>
79 <row id="row14" label="S. grahami" otu="otu6">
80 <cell char="c1" state="s2"/>
81 </row>
82 <row id="row15" label="S. brevirostris" otu="otu7">
83 <cell char="c1" state="s1"/>
84 </row>
85 </matrix>
86 </characters>
87 </nex:nexml>