| blob | a840a8ada1a4dfbd60599eb3f9ba4c4a70f03762 |
1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <otus id="otus1">
3 <otu id="otu2" label="S. acanthias"/> <!-- Squalus acanthias, spiny dogfish, NCBI 7797 -->
4 <otu id="otu3" label="S. glaucus" about="foo" typeof="tc:TaxonConcept" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#">
5 <meta rel="tc:hasName">
6 <meta typeof="tn:TaxonName" about="urn:lsid:zoobank.org:act:A6AD1B85-C65C-4079-B425-56828418620C">
7 <meta property="tn:genusPart">Squalus</meta>
8 <meta property="tn:specificEpithet">glaucus</meta>
9 </meta>
10 </meta>
11 </otu>
12 <otu id="otu4" label="S. cubensis"/> <!-- Cuban dogfish, NCBI 134995 -->
13 <otu id="otu5" label="S. megalops"/> <!-- dogfish, NCBI 335062 -->
14 <otu id="otu6" label="S. grahami"/> <!-- dogfish, NCBI 335029 -->
15 <otu id="otu7" label="S. brevirostris"/> <!-- dogfish, NCBI 436290 -->
16 </otus>
17 <trees id="trees16" otus="otus1">
18 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
19 <node id="node19" root="true"/>
20 <node id="node20" label="S. acanthias" otu="otu2"/>
21 <node id="node21"/>
22 <node id="node22"/>
23 <node id="node27"/>
24 <node id="node23"/>
25 <node id="node26" label="S. megalops" otu="otu5"/>
26 <node id="node28" label="S. grahami" otu="otu6"/>
27 <node id="node29" label="S. brevirostris" otu="otu7"/>
28 <node id="node24" label="S. glaucus" otu="otu3"/>
29 <node id="node25" label="S. cubensis" otu="otu4"/>
30 <edge id="edge20" length="4" source="node19" target="node20"/>
31 <edge id="edge21" length="1" source="node19" target="node21"/>
32 <edge id="edge22" length="1" source="node21" target="node22"/>
33 <edge id="edge27" length="2" source="node21" target="node27"/>
34 <edge id="edge23" length="1" source="node22" target="node23"/>
35 <edge id="edge26" length="2" source="node22" target="node26"/>
36 <edge id="edge28" length="1" source="node27" target="node28"/>
37 <edge id="edge29" length="1" source="node27" target="node29"/>
38 <edge id="edge24" length="1" source="node23" target="node24"/>
39 <edge id="edge25" length="1" source="node23" target="node25"/>
40 </tree>
41 </trees>
42 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
43 <format>
44 <states id="states10">
45 <state id="s1" symbol="0"/>
46 <state id="s2" symbol="1"/>
47 <state id="s3" symbol="2"/>
48 <state id="s4" symbol="3"/>
49 <state id="s5" symbol="4"/>
50 <state id="s6" symbol="5"/>
51 <state id="s7" symbol="6"/>
52 <state id="s8" symbol="7"/>
53 <state id="s9" symbol="8"/>
54 <state id="s10" symbol="9"/>
55 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
56 <uncertain_state_set id="s12" symbol="?">
57 <member state="s1"/>
58 <member state="s2"/>
59 <member state="s3"/>
60 <member state="s4"/>
61 <member state="s5"/>
62 <member state="s6"/>
63 <member state="s7"/>
64 <member state="s8"/>
65 <member state="s9"/>
66 <member state="s10"/>
67 <member state="s11"/>
68 </uncertain_state_set>
69 </states>
70 <char id="c1" states="states10"/>
71 </format>
72 <matrix>
73 <row id="row9" label="S. acanthias" otu="otu2">
74 <cell char="c1" state="s1"/>
75 </row>
76 <row id="row11" label="S. glaucus" otu="otu3">
77 <cell char="c1" state="s3"/>
78 </row>
79 <row id="row12" label="S. cubensis" otu="otu4">
80 <cell char="c1" state="s3"/>
81 </row>
82 <row id="row13" label="S. megalops" otu="otu5">
83 <cell char="c1" state="s1"/>
84 </row>
85 <row id="row14" label="S. grahami" otu="otu6">
86 <cell char="c1" state="s2"/>
87 </row>
88 <row id="row15" label="S. brevirostris" otu="otu7">
89 <cell char="c1" state="s1"/>
90 </row>
91 </matrix>
92 </characters>
93 </nex:nexml>