| blob | 6845e441790c6b42b470577d3f3c3775757a513d |
1 #---------------------------------------------------------------------------------
2 # qrna 1.2b (Tue Dec 18 15:04:38 CST 2001) using squid 1.5m (Sept 1997)
3 #---------------------------------------------------------------------------------
4 # PAM model = BLOSUM62 scaled by 1.000
5 #---------------------------------------------------------------------------------
6 # RNA model = /mix_tied_linux.cfg
7 #---------------------------------------------------------------------------------
8 # seq file = ecoli-trna.blast.q
9 # #seqs: 94 (max_len = 78)
10 #---------------------------------------------------------------------------------
11 # full length version: -- length range = [0,1000]
12 #---------------------------------------------------------------------------------
13 # 1 [+ strand]
14 >DA0780-1- (76)
15 >ECOLI-225501- (76)
17 length alignment: 76 (id=77.63)
18 posX: 0-75 [0-72](73) -- (0.18 0.30 0.36 0.16)
19 posY: 0-75 [0-71](72) -- (0.17 0.29 0.33 0.21)
20 21.414226 -10.515196 16.075247
21 19.988807 -3.972533 12.698167
22 LOCAL_DIAG_VITERBI -- [Inside SCFG]
23 winner = OTH
24 OTH ends = 0 75
25 COD ends = 74 0
26 RNA ends = 0 12
27 OTH = 20.871 COD = -4.957 RNA = 15.208
28 logoddspostOTH = 0.000 logoddspostCOD = -25.828 logoddspostRNA = -5.663
30 # 2 [+ strand]
31 >DA0780-1- (76)
32 >ECOLI-4034592- (76)
34 length alignment: 76 (id=77.63)
35 posX: 0-75 [0-72](73) -- (0.18 0.30 0.36 0.16)
36 posY: 0-75 [0-71](72) -- (0.17 0.29 0.33 0.21)
37 21.414226 -10.515196 16.075247
38 19.988807 -3.972533 12.698167
39 LOCAL_DIAG_VITERBI -- [Inside SCFG]
40 winner = OTH
41 OTH ends = 0 75
42 COD ends = 74 0
43 RNA ends = 0 12
44 OTH = 20.871 COD = -4.957 RNA = 15.208
45 logoddspostOTH = 0.000 logoddspostCOD = -25.828 logoddspostRNA = -5.663
47 # 3 [+ strand]
48 >DA0780-1- (70)
49 >ECOLI-3979754- (70)
51 length alignment: 70 (id=72.86)
52 posX: 0-69 [0-68](69) -- (0.17 0.29 0.38 0.16)
53 posY: 0-69 [0-69](70) -- (0.16 0.30 0.36 0.19)
54 21.384909 12.463364 22.249356
55 21.249381 17.921616 22.037246
56 LOCAL_DIAG_VITERBI -- [Inside SCFG]
57 winner = RNA
58 OTH ends = 0 69
59 COD ends = 68 1
60 RNA ends = 3 69
61 OTH = 21.319 COD = 16.954 RNA = 22.147
62 logoddspostOTH = 0.000 logoddspostCOD = -4.365 logoddspostRNA = 0.828
64 # 4 [+ strand]
65 >DA0780-8- (56)
66 >ECOLI-779995- (56)
68 length alignment: 56 (id=71.43)
69 posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
70 posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
71 14.761275 -0.369781 17.076846
72 14.838704 10.225100 21.877122
73 LOCAL_DIAG_VITERBI -- [Inside SCFG]
74 winner = RNA
75 OTH ends = 55 0
76 COD ends = 54 0
77 RNA ends = 35 19
78 OTH = 14.801 COD = 9.226 RNA = 20.928
79 logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
81 # 5 [+ strand]
82 >DA0780-8- (56)
83 >ECOLI-780298- (56)
85 length alignment: 56 (id=71.43)
86 posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
87 posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
88 14.761275 -0.369781 17.076846
89 14.838704 10.225100 21.877122
90 LOCAL_DIAG_VITERBI -- [Inside SCFG]
91 winner = RNA
92 OTH ends = 55 0
93 COD ends = 54 0
94 RNA ends = 35 19
95 OTH = 14.801 COD = 9.226 RNA = 20.928
96 logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
98 # 6 [+ strand]
99 >DA0780-8- (56)
100 >ECOLI-2518730- (56)
102 length alignment: 56 (id=71.43)
103 posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
104 posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
105 14.761275 -0.369781 17.076846
106 14.838704 10.225100 21.877122
107 LOCAL_DIAG_VITERBI -- [Inside SCFG]
108 winner = RNA
109 OTH ends = 55 0
110 COD ends = 54 0
111 RNA ends = 35 19
112 OTH = 14.801 COD = 9.226 RNA = 20.928
113 logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
115 # 7 [+ strand]
116 >DA0780-8- (56)
117 >ECOLI-2518850- (56)
119 length alignment: 56 (id=71.43)
120 posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
121 posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
122 14.761275 -0.369781 17.076846
123 14.838704 10.225100 21.877122
124 LOCAL_DIAG_VITERBI -- [Inside SCFG]
125 winner = RNA
126 OTH ends = 55 0
127 COD ends = 54 0
128 RNA ends = 35 19
129 OTH = 14.801 COD = 9.226 RNA = 20.928
130 logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
132 # 8 [+ strand]
133 >DA0780-8- (56)
134 >ECOLI-2518972- (56)
136 length alignment: 56 (id=71.43)
137 posX: 0-55 [0-55](56) -- (0.20 0.29 0.34 0.18)
138 posY: 0-55 [0-54](55) -- (0.18 0.29 0.35 0.18)
139 14.761275 -0.369781 17.076846
140 14.838704 10.225100 21.877122
141 LOCAL_DIAG_VITERBI -- [Inside SCFG]
142 winner = RNA
143 OTH ends = 55 0
144 COD ends = 54 0
145 RNA ends = 35 19
146 OTH = 14.801 COD = 9.226 RNA = 20.928
147 logoddspostOTH = 0.000 logoddspostCOD = -5.574 logoddspostRNA = 6.127
149 # 9 [+ strand]
150 >DA0780-2- (73)
151 >ECOLI-2284230- (73)
153 length alignment: 73 (id=64.38)
154 posX: 0-72 [0-71](72) -- (0.18 0.31 0.35 0.17)
155 posY: 0-72 [0-72](73) -- (0.15 0.27 0.38 0.19)
156 13.918545 -8.608490 24.007519
157 15.073192 7.016852 12.344431
158 LOCAL_DIAG_VITERBI -- [Inside SCFG]
159 winner = RNA
160 OTH ends = 72 0
161 COD ends = 72 0
162 RNA ends = 0 70
163 OTH = 14.608 COD = 6.017 RNA = 23.008
164 logoddspostOTH = 0.000 logoddspostCOD = -8.592 logoddspostRNA = 8.400
166 # 10 [+ strand]
167 >DA0780-7- (59)
168 >ECOLI-2945191- (59)
170 length alignment: 59 (id=67.80)
171 posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
172 posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
173 7.994668 -17.443195 7.730549
174 8.785962 -9.672509 13.155362
175 LOCAL_DIAG_VITERBI -- [Inside SCFG]
176 winner = RNA
177 OTH ends = 58 0
178 COD ends = 58 1
179 RNA ends = 39 21
180 OTH = 8.444 COD = -10.666 RNA = 12.189
181 logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
183 # 11 [+ strand]
184 >DA0780-7- (59)
185 >ECOLI-2945301- (59)
187 length alignment: 59 (id=67.80)
188 posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
189 posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
190 7.994668 -17.443195 7.730549
191 8.785962 -9.672509 13.155362
192 LOCAL_DIAG_VITERBI -- [Inside SCFG]
193 winner = RNA
194 OTH ends = 58 0
195 COD ends = 58 1
196 RNA ends = 39 21
197 OTH = 8.444 COD = -10.666 RNA = 12.189
198 logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
200 # 12 [+ strand]
201 >DA0780-7- (59)
202 >ECOLI-2945411- (59)
204 length alignment: 59 (id=67.80)
205 posX: 0-58 [0-55](56) -- (0.20 0.27 0.36 0.18)
206 posY: 0-58 [0-56](57) -- (0.19 0.28 0.32 0.21)
207 7.994668 -17.443195 7.730549
208 8.785962 -9.672509 13.155362
209 LOCAL_DIAG_VITERBI -- [Inside SCFG]
210 winner = RNA
211 OTH ends = 58 0
212 COD ends = 58 1
213 RNA ends = 39 21
214 OTH = 8.444 COD = -10.666 RNA = 12.189
215 logoddspostOTH = 0.000 logoddspostCOD = -19.110 logoddspostRNA = 3.745
217 # 13 [+ strand]
218 >DA0780-1- (76)
219 >ECOLI-3424373- (76)
221 length alignment: 76 (id=77.63)
222 posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
223 posY: 0-75 [0-71](72) -- (0.21 0.33 0.29 0.17)
224 20.682006 -9.755632 13.248665
225 21.241284 -22.237923 16.258281
226 LOCAL_DIAG_VITERBI -- [Inside SCFG]
227 winner = OTH
228 OTH ends = 75 0
229 COD ends = 1 68
230 RNA ends = 75 63
231 OTH = 20.989 COD = -10.755 RNA = 15.427
232 logoddspostOTH = 0.000 logoddspostCOD = -31.744 logoddspostRNA = -5.561
234 # 14 [+ strand]
235 >DA0780-6- (71)
236 >ECOLI-2815582- (71)
238 length alignment: 71 (id=71.83)
239 posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
240 posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
241 16.431838 -14.269383 12.463979
242 16.326307 -7.331733 13.720289
243 LOCAL_DIAG_VITERBI -- [Inside SCFG]
244 winner = OTH
245 OTH ends = 0 70
246 COD ends = 70 1
247 RNA ends = 24 8
248 OTH = 16.380 COD = -8.320 RNA = 13.225
249 logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
251 # 15 [+ strand]
252 >DA0780-6- (71)
253 >ECOLI-2815857- (71)
255 length alignment: 71 (id=71.83)
256 posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
257 posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
258 16.431838 -14.269383 12.463979
259 16.326307 -7.331733 13.720289
260 LOCAL_DIAG_VITERBI -- [Inside SCFG]
261 winner = OTH
262 OTH ends = 0 70
263 COD ends = 70 1
264 RNA ends = 24 8
265 OTH = 16.380 COD = -8.320 RNA = 13.225
266 logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
268 # 16 [+ strand]
269 >DA0780-6- (71)
270 >ECOLI-2815996- (71)
272 length alignment: 71 (id=71.83)
273 posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
274 posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
275 16.431838 -14.269383 12.463979
276 16.326307 -7.331733 13.720289
277 LOCAL_DIAG_VITERBI -- [Inside SCFG]
278 winner = OTH
279 OTH ends = 0 70
280 COD ends = 70 1
281 RNA ends = 24 8
282 OTH = 16.380 COD = -8.320 RNA = 13.225
283 logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
285 # 17 [+ strand]
286 >DA0780-6- (71)
287 >ECOLI-2816271- (71)
289 length alignment: 71 (id=71.83)
290 posX: 0-70 [0-67](68) -- (0.16 0.34 0.31 0.19)
291 posY: 0-70 [0-68](69) -- (0.19 0.32 0.28 0.22)
292 16.431838 -14.269383 12.463979
293 16.326307 -7.331733 13.720289
294 LOCAL_DIAG_VITERBI -- [Inside SCFG]
295 winner = OTH
296 OTH ends = 0 70
297 COD ends = 70 1
298 RNA ends = 24 8
299 OTH = 16.380 COD = -8.320 RNA = 13.225
300 logoddspostOTH = 0.000 logoddspostCOD = -24.700 logoddspostRNA = -3.155
302 # 18 [+ strand]
303 >DA0780-1- (76)
304 >ECOLI-2515836- (76)
306 length alignment: 76 (id=71.05)
307 posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
308 posY: 0-75 [0-71](72) -- (0.21 0.33 0.26 0.19)
309 14.736984 -14.375325 8.884532
310 14.851236 -24.156886 9.868232
311 LOCAL_DIAG_VITERBI -- [Inside SCFG]
312 winner = OTH
313 OTH ends = 75 0
314 COD ends = 1 75
315 RNA ends = 75 63
316 OTH = 14.795 COD = -15.374 RNA = 9.459
317 logoddspostOTH = 0.000 logoddspostCOD = -30.169 logoddspostRNA = -5.337
319 # 19 [+ strand]
320 >DA0780-1- (76)
321 >ECOLI-2515951- (76)
323 length alignment: 76 (id=71.05)
324 posX: 0-75 [0-72](73) -- (0.16 0.36 0.30 0.18)
325 posY: 0-75 [0-71](72) -- (0.21 0.33 0.26 0.19)
326 14.736984 -14.375325 8.884532
327 14.851236 -24.156886 9.868232
328 LOCAL_DIAG_VITERBI -- [Inside SCFG]
329 winner = OTH
330 OTH ends = 75 0
331 COD ends = 1 75
332 RNA ends = 75 63
333 OTH = 14.795 COD = -15.374 RNA = 9.459
334 logoddspostOTH = 0.000 logoddspostCOD = -30.169 logoddspostRNA = -5.337
336 # 20 [+ strand]
337 >DA0780-6- (52)
338 >ECOLI-2155594- (52)
340 length alignment: 52 (id=71.15)
341 posX: 0-51 [0-48](49) -- (0.16 0.41 0.27 0.16)
342 posY: 0-51 [0-48](49) -- (0.18 0.41 0.29 0.12)
343 5.862400 -19.930995 -1.194701
344 7.783836 -15.355771 0.726735
345 LOCAL_DIAG_VITERBI -- [Inside SCFG]
346 winner = OTH
347 OTH ends = 51 0
348 COD ends = 50 0
349 RNA ends = 52 52
350 OTH = 7.122 COD = -16.296 RNA = 0.065
351 logoddspostOTH = 0.000 logoddspostCOD = -23.418 logoddspostRNA = -7.057
353 # 21 [+ strand]
354 >DA0780-7- (59)
355 >ECOLI-3315645- (59)
357 length alignment: 59 (id=66.10)
358 posX: 0-58 [0-55](56) -- (0.18 0.36 0.27 0.20)
359 posY: 0-58 [0-56](57) -- (0.21 0.30 0.28 0.21)
360 7.886726 -12.920042 12.597060
361 6.999592 -16.997763 6.986972
362 LOCAL_DIAG_VITERBI -- [Inside SCFG]
363 winner = RNA
364 OTH ends = 0 58
365 COD ends = 0 58
366 RNA ends = 20 36
367 OTH = 7.510 COD = -13.837 RNA = 11.626
368 logoddspostOTH = 0.000 logoddspostCOD = -21.347 logoddspostRNA = 4.116
370 # 22 [+ strand]
371 >DA0940-1- (77)
372 >ECOLI-225500- (77)
374 length alignment: 77 (id=75.32)
375 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
376 posY: 0-76 [0-74](75) -- (0.16 0.31 0.33 0.20)
377 24.181055 -0.353323 26.401988
378 23.109013 11.590026 23.929123
379 LOCAL_DIAG_VITERBI -- [Inside SCFG]
380 winner = RNA
381 OTH ends = 0 76
382 COD ends = 76 0
383 RNA ends = 0 73
384 OTH = 23.742 COD = 10.590 RNA = 25.641
385 logoddspostOTH = 0.000 logoddspostCOD = -13.152 logoddspostRNA = 1.899
387 # 23 [+ strand]
388 >DA0940-1- (77)
389 >ECOLI-4034591- (77)
391 length alignment: 77 (id=75.32)
392 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
393 posY: 0-76 [0-74](75) -- (0.16 0.31 0.33 0.20)
394 24.181055 -0.353323 26.401988
395 23.109013 11.590026 23.929123
396 LOCAL_DIAG_VITERBI -- [Inside SCFG]
397 winner = RNA
398 OTH ends = 0 76
399 COD ends = 76 0
400 RNA ends = 0 73
401 OTH = 23.742 COD = 10.590 RNA = 25.641
402 logoddspostOTH = 0.000 logoddspostCOD = -13.152 logoddspostRNA = 1.899
404 # 24 [+ strand]
405 >DA0940-1- (77)
406 >ECOLI-779777- (77)
408 length alignment: 77 (id=70.13)
409 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
410 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
411 19.326669 -6.735706 19.727199
412 19.360233 -2.001147 14.966454
413 LOCAL_DIAG_VITERBI -- [Inside SCFG]
414 winner = OTH
415 OTH ends = 76 0
416 COD ends = 74 1
417 RNA ends = 0 73
418 OTH = 19.344 COD = -2.948 RNA = 18.779
419 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
421 # 25 [+ strand]
422 >DA0940-1- (77)
423 >ECOLI-780066- (77)
425 length alignment: 77 (id=70.13)
426 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
427 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
428 19.326669 -6.735706 19.727199
429 19.360233 -2.001147 14.966454
430 LOCAL_DIAG_VITERBI -- [Inside SCFG]
431 winner = OTH
432 OTH ends = 76 0
433 COD ends = 74 1
434 RNA ends = 0 73
435 OTH = 19.344 COD = -2.948 RNA = 18.779
436 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
438 # 26 [+ strand]
439 >DA0940-1- (77)
440 >ECOLI-780370- (77)
442 length alignment: 77 (id=70.13)
443 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
444 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
445 19.326669 -6.735706 19.727199
446 19.360233 -2.001147 14.966454
447 LOCAL_DIAG_VITERBI -- [Inside SCFG]
448 winner = OTH
449 OTH ends = 76 0
450 COD ends = 74 1
451 RNA ends = 0 73
452 OTH = 19.344 COD = -2.948 RNA = 18.779
453 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
455 # 27 [+ strand]
456 >DA0940-1- (77)
457 >ECOLI-780592- (77)
459 length alignment: 77 (id=70.13)
460 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
461 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
462 19.326669 -6.735706 19.727199
463 19.360233 -2.001147 14.966454
464 LOCAL_DIAG_VITERBI -- [Inside SCFG]
465 winner = OTH
466 OTH ends = 76 0
467 COD ends = 74 1
468 RNA ends = 0 73
469 OTH = 19.344 COD = -2.948 RNA = 18.779
470 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
472 # 28 [+ strand]
473 >DA0940-1- (77)
474 >ECOLI-780800- (77)
476 length alignment: 77 (id=70.13)
477 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
478 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
479 19.326669 -6.735706 19.727199
480 19.360233 -2.001147 14.966454
481 LOCAL_DIAG_VITERBI -- [Inside SCFG]
482 winner = OTH
483 OTH ends = 76 0
484 COD ends = 74 1
485 RNA ends = 0 73
486 OTH = 19.344 COD = -2.948 RNA = 18.779
487 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
489 # 29 [+ strand]
490 >DA0940-1- (77)
491 >ECOLI-2519045- (77)
493 length alignment: 77 (id=70.13)
494 posX: 0-76 [0-75](76) -- (0.14 0.34 0.37 0.14)
495 posY: 0-76 [0-74](75) -- (0.21 0.24 0.27 0.28)
496 19.326669 -6.735706 19.727199
497 19.360233 -2.001147 14.966454
498 LOCAL_DIAG_VITERBI -- [Inside SCFG]
499 winner = OTH
500 OTH ends = 76 0
501 COD ends = 74 1
502 RNA ends = 0 73
503 OTH = 19.344 COD = -2.948 RNA = 18.779
504 logoddspostOTH = 0.000 logoddspostCOD = -22.291 logoddspostRNA = -0.564
506 # 30 [+ strand]
507 >DA0940-1- (78)
508 >ECOLI-563946- (78)
510 length alignment: 78 (id=69.23)
511 posX: 0-77 [0-75](76) -- (0.14 0.34 0.37 0.14)
512 posY: 0-77 [0-75](76) -- (0.18 0.30 0.32 0.20)
513 17.963663 -9.269558 17.104482
514 18.280556 -6.326426 22.143566
515 LOCAL_DIAG_VITERBI -- [Inside SCFG]
516 winner = RNA
517 OTH ends = 77 0
518 COD ends = 72 1
519 RNA ends = 44 28
520 OTH = 18.131 COD = -7.150 RNA = 21.187
521 logoddspostOTH = 0.000 logoddspostCOD = -25.281 logoddspostRNA = 3.056
523 # 31 [+ strand]
524 >DA0940-1- (78)
525 >ECOLI-3979754- (78)
527 length alignment: 78 (id=69.23)
528 posX: 0-77 [0-75](76) -- (0.14 0.34 0.37 0.14)
529 posY: 0-77 [0-75](76) -- (0.14 0.33 0.36 0.17)
530 18.718315 -12.877073 20.514241
531 18.551819 -5.649083 11.109117
532 LOCAL_DIAG_VITERBI -- [Inside SCFG]
533 winner = RNA
534 OTH ends = 0 77
535 COD ends = 76 1
536 RNA ends = 0 74
537 OTH = 18.637 COD = -6.639 RNA = 19.516
538 logoddspostOTH = 0.000 logoddspostCOD = -25.277 logoddspostRNA = 0.879
540 # 32 [+ strand]
541 >DA0940-2- (75)
542 >ECOLI-3980115- (75)
544 length alignment: 75 (id=64.00)
545 posX: 0-74 [0-74](75) -- (0.15 0.35 0.36 0.15)
546 posY: 0-74 [0-74](75) -- (0.16 0.27 0.36 0.21)
547 16.673417 5.650160 34.947176
548 16.791520 4.389619 18.597200
549 LOCAL_DIAG_VITERBI -- [Inside SCFG]
550 winner = RNA
551 OTH ends = 74 0
552 COD ends = 2 73
553 RNA ends = 0 70
554 OTH = 16.734 COD = 5.153 RNA = 33.947
555 logoddspostOTH = 0.000 logoddspostCOD = -11.580 logoddspostRNA = 17.214
557 # 33 [+ strand]
558 >DA0940-8- (58)
559 >ECOLI-3979896- (58)
561 length alignment: 58 (id=68.97)
562 posX: 0-57 [0-56](57) -- (0.18 0.32 0.33 0.18)
563 posY: 0-57 [0-55](56) -- (0.16 0.21 0.30 0.32)
564 11.514323 -1.612738 9.963681
565 11.181613 -0.641287 8.426787
566 LOCAL_DIAG_VITERBI -- [Inside SCFG]
567 winner = OTH
568 OTH ends = 0 57
569 COD ends = 57 0
570 RNA ends = 20 37
571 OTH = 11.358 COD = -1.047 RNA = 9.391
572 logoddspostOTH = 0.000 logoddspostCOD = -12.404 logoddspostRNA = -1.967
574 # 34 [+ strand]
575 >DA0940-1- (77)
576 >ECOLI-3424371- (77)
578 length alignment: 77 (id=75.32)
579 posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
580 posY: 0-76 [0-74](75) -- (0.20 0.33 0.31 0.16)
581 23.109013 5.520843 24.913393
582 24.181055 9.917873 33.181724
583 LOCAL_DIAG_VITERBI -- [Inside SCFG]
584 winner = RNA
585 OTH ends = 76 0
586 COD ends = 76 2
587 RNA ends = 76 3
588 OTH = 23.742 COD = 8.985 RNA = 32.186
589 logoddspostOTH = 0.000 logoddspostCOD = -14.758 logoddspostRNA = 8.444
591 # 35 [+ strand]
592 >DA0940-1- (77)
593 >ECOLI-2515834- (77)
595 length alignment: 77 (id=70.13)
596 posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
597 posY: 0-76 [0-74](75) -- (0.20 0.33 0.28 0.19)
598 18.645991 3.152473 25.533618
599 18.627918 3.690656 29.967242
600 LOCAL_DIAG_VITERBI -- [Inside SCFG]
601 winner = RNA
602 OTH ends = 0 76
603 COD ends = 76 2
604 RNA ends = 76 3
605 OTH = 18.637 COD = 3.447 RNA = 29.033
606 logoddspostOTH = 0.000 logoddspostCOD = -15.190 logoddspostRNA = 10.396
608 # 36 [+ strand]
609 >DA0940-1- (77)
610 >ECOLI-2515949- (77)
612 length alignment: 77 (id=70.13)
613 posX: 0-76 [0-75](76) -- (0.14 0.37 0.34 0.14)
614 posY: 0-76 [0-74](75) -- (0.20 0.33 0.28 0.19)
615 18.645991 3.152473 25.533618
616 18.627918 3.690656 29.967242
617 LOCAL_DIAG_VITERBI -- [Inside SCFG]
618 winner = RNA
619 OTH ends = 0 76
620 COD ends = 76 2
621 RNA ends = 76 3
622 OTH = 18.637 COD = 3.447 RNA = 29.033
623 logoddspostOTH = 0.000 logoddspostCOD = -15.190 logoddspostRNA = 10.396
625 # 37 [+ strand]
626 >DA0940-5- (76)
627 >ECOLI-2815580- (76)
629 length alignment: 76 (id=71.05)
630 posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
631 posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
632 13.333636 -36.156781 13.057277
633 13.159042 -36.377514 9.144681
634 LOCAL_DIAG_VITERBI -- [Inside SCFG]
635 winner = OTH
636 OTH ends = 0 75
637 COD ends = 0 73
638 RNA ends = 32 52
639 OTH = 13.249 COD = -36.263 RNA = 12.150
640 logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
642 # 38 [+ strand]
643 >DA0940-5- (76)
644 >ECOLI-2815855- (76)
646 length alignment: 76 (id=71.05)
647 posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
648 posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
649 13.333636 -36.156781 13.057277
650 13.159042 -36.377514 9.144681
651 LOCAL_DIAG_VITERBI -- [Inside SCFG]
652 winner = OTH
653 OTH ends = 0 75
654 COD ends = 0 73
655 RNA ends = 32 52
656 OTH = 13.249 COD = -36.263 RNA = 12.150
657 logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
659 # 39 [+ strand]
660 >DA0940-5- (76)
661 >ECOLI-2815994- (76)
663 length alignment: 76 (id=71.05)
664 posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
665 posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
666 13.333636 -36.156781 13.057277
667 13.159042 -36.377514 9.144681
668 LOCAL_DIAG_VITERBI -- [Inside SCFG]
669 winner = OTH
670 OTH ends = 0 75
671 COD ends = 0 73
672 RNA ends = 32 52
673 OTH = 13.249 COD = -36.263 RNA = 12.150
674 logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
676 # 40 [+ strand]
677 >DA0940-5- (76)
678 >ECOLI-2816269- (76)
680 length alignment: 76 (id=71.05)
681 posX: 0-75 [0-71](72) -- (0.15 0.35 0.35 0.15)
682 posY: 0-75 [0-71](72) -- (0.18 0.31 0.31 0.21)
683 13.333636 -36.156781 13.057277
684 13.159042 -36.377514 9.144681
685 LOCAL_DIAG_VITERBI -- [Inside SCFG]
686 winner = OTH
687 OTH ends = 0 75
688 COD ends = 0 73
689 RNA ends = 32 52
690 OTH = 13.249 COD = -36.263 RNA = 12.150
691 logoddspostOTH = 0.000 logoddspostCOD = -49.512 logoddspostRNA = -1.099
693 # 41 [+ strand]
694 >DA0940-9- (69)
695 >ECOLI-1804478- (69)
697 length alignment: 69 (id=66.67)
698 posX: 0-68 [0-67](68) -- (0.15 0.34 0.35 0.16)
699 posY: 0-68 [0-66](67) -- (0.13 0.39 0.31 0.16)
700 10.953909 -9.639667 10.662024
701 12.823044 -5.075973 10.777964
702 LOCAL_DIAG_VITERBI -- [Inside SCFG]
703 winner = OTH
704 OTH ends = 68 0
705 COD ends = 66 1
706 RNA ends = 51 31
707 OTH = 12.172 COD = -6.016 RNA = 10.721
708 logoddspostOTH = 0.000 logoddspostCOD = -18.188 logoddspostRNA = -1.451
710 # 42 [+ strand]
711 >DA0940-8- (58)
712 >ECOLI-3706024- (58)
714 length alignment: 58 (id=68.97)
715 posX: 0-57 [0-55](56) -- (0.18 0.34 0.30 0.18)
716 posY: 0-57 [0-55](56) -- (0.20 0.39 0.25 0.16)
717 9.771742 -15.688073 2.357499
718 9.187335 -13.325765 1.773092
719 LOCAL_DIAG_VITERBI -- [Inside SCFG]
720 winner = OTH
721 OTH ends = 0 57
722 COD ends = 55 1
723 RNA ends = -1 -1
724 OTH = 9.509 COD = -14.069 RNA = 2.095
725 logoddspostOTH = 0.000 logoddspostCOD = -23.578 logoddspostRNA = -7.414
727 # 43 [+ strand]
728 >DA0940-7- (73)
729 >ECOLI-695888- (73)
731 length alignment: 73 (id=64.38)
732 posX: 0-72 [0-69](70) -- (0.16 0.34 0.34 0.16)
733 posY: 0-72 [0-69](70) -- (0.24 0.26 0.26 0.24)
734 10.281468 -22.207847 3.873799
735 9.636380 -19.716135 1.831177
736 LOCAL_DIAG_VITERBI -- [Inside SCFG]
737 winner = OTH
738 OTH ends = 0 72
739 COD ends = 72 1
740 RNA ends = 10 26
741 OTH = 9.995 COD = -20.480 RNA = 3.187
742 logoddspostOTH = 0.000 logoddspostCOD = -30.475 logoddspostRNA = -6.807
744 # 44 [+ strand]
745 >DA0940-7- (73)
746 >ECOLI-696281- (73)
748 length alignment: 73 (id=64.38)
749 posX: 0-72 [0-69](70) -- (0.16 0.34 0.34 0.16)
750 posY: 0-72 [0-69](70) -- (0.24 0.26 0.26 0.24)
751 10.281468 -22.207847 3.873799
752 9.636380 -19.716135 1.831177
753 LOCAL_DIAG_VITERBI -- [Inside SCFG]
754 winner = OTH
755 OTH ends = 0 72
756 COD ends = 72 1
757 RNA ends = 10 26
758 OTH = 9.995 COD = -20.480 RNA = 3.187
759 logoddspostOTH = 0.000 logoddspostCOD = -30.475 logoddspostRNA = -6.807
761 # 45 [+ strand]
762 >DA0940-6- (62)
763 >ECOLI-695990- (62)
765 length alignment: 62 (id=62.90)
766 posX: 0-61 [0-60](61) -- (0.16 0.38 0.30 0.16)
767 posY: 0-61 [0-60](61) -- (0.25 0.30 0.26 0.20)
768 10.452429 5.015902 10.936383
769 9.772183 2.186248 11.450894
770 LOCAL_DIAG_VITERBI -- [Inside SCFG]
771 winner = RNA
772 OTH ends = 0 61
773 COD ends = 0 61
774 RNA ends = 38 22
775 OTH = 10.152 COD = 4.206 RNA = 11.216
776 logoddspostOTH = 0.000 logoddspostCOD = -5.946 logoddspostRNA = 1.064
778 # 46 [+ strand]
779 >DA0940-6- (62)
780 >ECOLI-696099- (62)
782 length alignment: 62 (id=62.90)
783 posX: 0-61 [0-60](61) -- (0.16 0.38 0.30 0.16)
784 posY: 0-61 [0-60](61) -- (0.25 0.30 0.26 0.20)
785 10.452429 5.015902 10.936383
786 9.772183 2.186248 11.450894
787 LOCAL_DIAG_VITERBI -- [Inside SCFG]
788 winner = RNA
789 OTH ends = 0 61
790 COD ends = 0 61
791 RNA ends = 38 22
792 OTH = 10.152 COD = 4.206 RNA = 11.216
793 logoddspostOTH = 0.000 logoddspostCOD = -5.946 logoddspostRNA = 1.064
795 # 47 [+ strand]
796 >DA0940-10- (69)
797 >ECOLI-2816349- (69)
799 length alignment: 69 (id=63.77)
800 posX: 0-68 [0-66](67) -- (0.15 0.34 0.36 0.15)
801 posY: 0-68 [0-65](66) -- (0.18 0.27 0.36 0.18)
802 9.155278 -17.238488 5.252253
803 9.115589 -17.289968 6.575597
804 LOCAL_DIAG_VITERBI -- [Inside SCFG]
805 winner = OTH
806 OTH ends = 0 68
807 COD ends = 0 56
808 RNA ends = 26 10
809 OTH = 9.136 COD = -17.264 RNA = 6.061
810 logoddspostOTH = 0.000 logoddspostCOD = -26.400 logoddspostRNA = -3.075