| blob | ac7fed048084c0681fc1aa1b2223088ddb39a525 |
1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <otus id="otus1">
3 <otu id="otu2" label="S. amia"/>
4 <otu id="otu3" label="S. cordyla"/>
5 <otu id="otu4" label="S. pelagicus"/>
6 <otu id="otu5" label="S. glaucus">
7 <dict xmlns:cdao="http://evolutionaryontology.org/cdao/1.0/cdao.owl" id="dict1">
8 <any id="bar" xmlns="">
9 <cdao:TU rdf:id="baz">
10 <cdao:has_Taxonomy_Reference rdf:resource="http://www.zoobank.org/?lsid=urn:lsid:zoobank.org:act:2CD1E27B-D572-447C-BD0F-2AA998447FBF"/>
11 </cdao:TU>
12 </any>
13 </dict>
14 </otu>
15 <otu id="otu6" label="S. scombrus"/> <!-- the Atlantic mackerel, Scomber scombrus -->
16 <otu id="otu7" label="S. thynnus"/>
17 </otus>
18 <trees id="trees16" otus="otus1">
19 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
20 <node id="node19" root="true"/>
21 <node id="node20" label="S. amia" otu="otu2"/>
22 <node id="node21"/>
23 <node id="node22"/>
24 <node id="node27"/>
25 <node id="node23"/>
26 <node id="node26" label="S. glaucus" otu="otu5"/>
27 <node id="node28" label="S. scombrus" otu="otu6"/>
28 <node id="node29" label="S. thynnus" otu="otu7"/>
29 <node id="node24" label="S. cordyla" otu="otu3"/>
30 <node id="node25" label="S. pelagicus" otu="otu4"/>
31 <edge id="edge20" length="4" source="node19" target="node20"/>
32 <edge id="edge21" length="1" source="node19" target="node21"/>
33 <edge id="edge22" length="1" source="node21" target="node22"/>
34 <edge id="edge27" length="2" source="node21" target="node27"/>
35 <edge id="edge23" length="1" source="node22" target="node23"/>
36 <edge id="edge26" length="2" source="node22" target="node26"/>
37 <edge id="edge28" length="1" source="node27" target="node28"/>
38 <edge id="edge29" length="1" source="node27" target="node29"/>
39 <edge id="edge24" length="1" source="node23" target="node24"/>
40 <edge id="edge25" length="1" source="node23" target="node25"/>
41 </tree>
42 </trees>
43 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
44 <format>
45 <states id="states10">
46 <state id="s1" symbol="0"/>
47 <state id="s2" symbol="1"/>
48 <state id="s3" symbol="2"/>
49 <state id="s4" symbol="3"/>
50 <state id="s5" symbol="4"/>
51 <state id="s6" symbol="5"/>
52 <state id="s7" symbol="6"/>
53 <state id="s8" symbol="7"/>
54 <state id="s9" symbol="8"/>
55 <state id="s10" symbol="9"/>
56 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
57 <uncertain_state_set id="s12" symbol="?">
58 <member state="s1"/>
59 <member state="s2"/>
60 <member state="s3"/>
61 <member state="s4"/>
62 <member state="s5"/>
63 <member state="s6"/>
64 <member state="s7"/>
65 <member state="s8"/>
66 <member state="s9"/>
67 <member state="s10"/>
68 <member state="s11"/>
69 </uncertain_state_set>
70 </states>
71 <char id="c1" states="states10"/>
72 </format>
73 <matrix>
74 <row id="row9" label="S. amia" otu="otu2">
75 <cell char="c1" state="s1"/>
76 </row>
77 <row id="row11" label="S. cordyla" otu="otu3">
78 <cell char="c1" state="s3"/>
79 </row>
80 <row id="row12" label="S. pelagicus" otu="otu4">
81 <cell char="c1" state="s3"/>
82 </row>
83 <row id="row13" label="S. glaucus" otu="otu5">
84 <cell char="c1" state="s1"/>
85 </row>
86 <row id="row14" label="S. scombrus" otu="otu6">
87 <cell char="c1" state="s2"/>
88 </row>
89 <row id="row15" label="S. thynnus" otu="otu7">
90 <cell char="c1" state="s1"/>
91 </row>
92 </matrix>
93 </characters>
94 </nex:nexml>