t/data/NC_008536.gb

   1 LOCUS       NC_008536               2001 bp    DNA     linear   BCT 21-JUL-2008
   2 DEFINITION  Solibacter usitatus Ellin6076, complete genome.
   3 ACCESSION   NC_008536 REGION: 1000..3000
   4 VERSION     NC_008536.1  GI:116619145
   5 PROJECT     GenomeProject:12638
   6 KEYWORDS    .
   7 SOURCE      Solibacter usitatus Ellin6076
   8   ORGANISM  Solibacter usitatus Ellin6076
   9             Bacteria; Acidobacteria; Solibacteres; Solibacterales;
  10             Solibacteraceae; Solibacter.
  11 REFERENCE   1  (bases 1 to 2001)
  12   AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
  13             del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
  14             Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
  15             Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
  16             Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
  17   CONSRTM   US DOE Joint Genome Institute
  18   TITLE     Complete sequence of Solibacter usitatus Ellin6076
  19   JOURNAL   Unpublished
  20 REFERENCE   2  (bases 1 to 2001)
  21   CONSRTM   NCBI Genome Project
  22   TITLE     Direct Submission
  23   JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
  24             Information, NIH, Bethesda, MD 20894, USA
  25 REFERENCE   3  (bases 1 to 2001)
  26   AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
  27             del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
  28             Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
  29             Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
  30             Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
  31   CONSRTM   US DOE Joint Genome Institute
  32   TITLE     Direct Submission
  33   JOURNAL   Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
  34             Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
  35 COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
  36             NCBI review. The reference sequence was derived from CP000473.
  37             URL -- http://www.jgi.doe.gov
  38             JGI Project ID: 3634513
  39             Source DNA and bacteria available from Cheryl R. Kuske
  40             (kuske@lanl.gov)
  41             Contacts: Cheryl R. Kuske (kuske@lanl.gov)
  42                  Paul Richardson (microbes@cuba.jgi-psf.org)
  43             Quality assurance done by JGI-Stanford
  44             Annotation done by JGI-ORNL and JGI-PGF
  45             Finishing done by JGI-LANL
  46             Finished microbial genomes have been curated to close all gaps with
  47             greater than 98% coverage of at least two independent clones. Each
  48             base pair has a minimum q (quality) value of 30 and the total error
  49             rate is less than one per 50000.
  50             The JGI and collaborators endorse the principles for the
  51             distribution and use of large scale sequencing data adopted by the
  52             larger genome sequencing community and urge users of this data to
  53             follow them. It is our intention to publish the work of this
  54             project in a timely fashion and we welcome collaborative
  55             interaction on the project and analysis.
  56             (http://www.genome.gov/page.cfm?pageID=10506376).
  57             COMPLETENESS: full length.
  58 FEATURES             Location/Qualifiers
  59      source          1..2001
  60                      /organism="Solibacter usitatus Ellin6076"
  61                      /mol_type="genomic DNA"
  62                      /strain="Ellin6076"
  63                      /db_xref="taxon:234267"
  64      gene            <1..403
  65                      /locus_tag="Acid_0001"
  66                      /db_xref="GeneID:4431688"
  67      CDS             <1..403
  68                      /locus_tag="Acid_0001"
  69                      /note="KEGG: aba:Acid345_0001 chromosomal replication
  70                      initiator protein DnaA
  71                      TIGRFAM: chromosomal replication initiator protein DnaA
  72                      PFAM: Chromosomal replication initiator, DnaA C-terminal
  73                      domain; Chromosomal replication initiator, DnaA
  74                      SMART: AAA ATPase"
  75                      /codon_start=1
  76                      /transl_table=11
  77                      /product="chromosomal replication initiator protein DnaA"
  78                      /protein_id="YP_821302.1"
  79                      /db_xref="GI:116619146"
  80                      /db_xref="InterPro:IPR001957"
  81                      /db_xref="InterPro:IPR003593"
  82                      /db_xref="InterPro:IPR013159"
  83                      /db_xref="InterPro:IPR013317"
  84                      /db_xref="GeneID:4431688"
  85                      /translation="MNYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDR
  86                      ETRAWLETEYTQLIQGGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV
  87                      LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQL
  88                      IDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQ
  89                      EEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI
  90                      LDKKAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVL
  91                      KHLVHVQDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNAS
  92                      LPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ"
  93      gene            638..1756
  94                      /locus_tag="Acid_0002"
  95                      /db_xref="GeneID:4431689"
  96      CDS             638..1756
  97                      /locus_tag="Acid_0002"
  98                      /EC_number="2.7.7.7"
  99                      /note="KEGG: aba:Acid345_0002 DNA polymerase III, beta
 100                      subunit
 101                      TIGRFAM: DNA polymerase III, beta subunit
 102                      PFAM: DNA polymerase III, beta chain"
 103                      /codon_start=1
 104                      /transl_table=11
 105                      /product="DNA polymerase III, beta subunit"
 106                      /protein_id="YP_821303.1"
 107                      /db_xref="GI:116619147"
 108                      /db_xref="InterPro:IPR001001"
 109                      /db_xref="GeneID:4431689"
 110                      /translation="MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITL
 111                      TATDLELGIRCSCPARVKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWASITSGR
 112                      SRTRIAGMSRESFPELPQMPEPIAQVPVKTLASMIARTSFAISMEESRFTLNGALLLM
 113                      RPEGLTMVATDGHRLAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAI
 114                      VAGDDNHLFFQIGHRLLITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQF
 115                      ADERSRAIRVQFNSGEVRVFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAI
 116                      SQDHVAFELKDQKSAGELRPAGDAIADQYRYVVMPMRI"
 117      gene            1782..>2001
 118                      /locus_tag="Acid_0003"
 119                      /db_xref="GeneID:4431690"
 120      CDS             1782..>2001
 121                      /locus_tag="Acid_0003"
 122                      /EC_number="5.99.1.3"
 123                      /note="KEGG: aba:Acid345_0008 DNA gyrase, B subunit
 124                      TIGRFAM: DNA gyrase, B subunit
 125                      PFAM: DNA gyrase, subunit B domain protein; ATP-binding
 126                      region, ATPase domain protein domain protein; TOPRIM
 127                      domain protein; DNA topoisomerase, type IIA, subunit B,
 128                      region 2 domain protein
 129                      SMART: DNA topoisomerase II"
 130                      /codon_start=1
 131                      /transl_table=11
 132                      /product="DNA gyrase subunit B"
 133                      /protein_id="YP_821304.1"
 134                      /db_xref="GI:116619148"
 135                      /db_xref="InterPro:IPR000565"
 136                      /db_xref="InterPro:IPR001241"
 137                      /db_xref="InterPro:IPR002288"
 138                      /db_xref="InterPro:IPR003594"
 139                      /db_xref="InterPro:IPR006171"
 140                      /db_xref="InterPro:IPR011557"
 141                      /db_xref="InterPro:IPR011558"
 142                      /db_xref="InterPro:IPR013506"
 143                      /db_xref="GeneID:4431690"
 144                      /translation="MPNEVNPVGGNGNVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMG
 145                      LHHLVYEVVDNSVDEALAGYATHIEVTIHDDNSVTVEDDGRGIPVGIHEEEGVSAAQV
 146                      VMTKLHAGGKFDSNSYKVSGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPK
 147                      ADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNYDTLAQRLRELAFLNKGLKITLTDER
 148                      VDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYND
 149                      AYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFGQKNGLFKDVKENLSGDDVREG
 150                      LTAVVSVKVPQPQFEGQTKGKLNSDIAGYMTQFVNDKLSEYFDKNSAVGRKIVGKAIE
 151                      ASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKLCELFLVEGESAGGTAKQG
 152                      RERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTGIGKDDFDVAKLRYDKI
 153                      IIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRIKKGKSEKYIKDEKE
 154                      FTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQIFHKVERRLRDS
 155                      RAVDVLTNVDLHVDNKAEFQVEANLKPVFEAMKAKGLNPQMKKDEEHSAWAVVFHDST
 156                      GAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDWVELLEYVKNE
 157                      GKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFSTLMGEDVES
 158                      RRKFIEENALDVKNLDV"
 159 ORIGIN
 160         1 ccgcgaactc gaaggcgccc tggttaaatt gatcgcgtac tcctccctca ccggaacgcc
 161        61 gatccacctg cagatggcgc aacaggtcct gaagcacctg gtccacgtgc aggaccgccg
 162       121 cgtcaccatg gattccatcc aaaaggccgt cgcggagaaa ttcagcatta agcagtccca
 163       181 gctcaaggaa aagagcaata ccaagaaggt ggtctatccg cggcaggtgg caatgtacct
 164       241 ggtcaaggag ctcaccaacg cgtcgctacc tgagatcggg cgcgctttcg gcggaaagca
 165       301 tcacaccacc gtgatccact cgatcaacaa aatcgagaag gatcgccaga gcgaccctga
 166       361 attgaacagg ttactacaca gcctaatgga ctcattacaa tgaccttcca ccgttttcca
 167       421 caattgccct tgcaccgggc atggggaaat ctgtgtatat cgcatgacag cgttggtttt
 168       481 gcgcaatttt ccgcgccgca atccgcagct tgacgtagca gaaagtggct gagtttagta
 169       541 taatttagat agtcttcaac actttgcaca gggcctatga atacggttat ttatcaggcc
 170       601 tatctataga gacagcaaag aactaggagc cgtgggcatg gaattcaccg tcagcaagag
 171       661 cgatctggta cgtgagctga gtctctcgca gggtgtggtg gaaaaaaaga ccaccattcc
 172       721 aatcctgtcg aacgtgctcc tggaggccgc ggacgatcgc attacgttga ctgcgaccga
 173       781 cctggaactg ggcatccgct gttcttgccc ggcgcgcgtc aagaaagaag ggtccggcac
 174       841 ggtgccggcg cgcaaactgc tcgattacat gcgtctgttg cccgaaggcg acgtgaacat
 175       901 gaagttcctg gacaatcact gggccagtat caccagcgga cgttctcgca ccaggattgc
 176       961 gggcatgtcg cgcgagagct tccccgaact gccgcagatg ccggagccga tcgcgcaggt
 177      1021 gcccgtcaaa acgctggcct ccatgatcgc ccgtacgtcc ttcgccatct ccatggagga
 178      1081 gtcgcgcttt acgctcaacg gcgcgctcct gctgatgcgc cccgaaggcc tcaccatggt
 179      1141 cgccaccgat ggccaccgcc tcgcctacgt gcaggccgag cccgcggaga gcggcagcgc
 180      1201 cgacaaaccc ttccgcgccc tcgtccccaa gaaggcgatg agcgaattga ccaagctcag
 181      1261 cgatgatgcc ggcgaaggcg ccatggccat cgtcgccggt gatgacaatc acctgttctt
 182      1321 ccaaattggc caccgcctgc tgatcacgcg aaagctcacc ggcaacttcc cggattacga
 183      1381 gcgcgtcttg cccaaagatc accagttcat ggccaagctc gagaagggcg aaatccgctc
 184      1441 ggcaatcgaa cgcgtggcgc agttcgccga tgaacggtcg cgcgccattc gggtgcaatt
 185      1501 caacagcggc gaagtccgcg tcttcagttc cagcgtcgaa accggcgaga gcgaagagag
 186      1561 cgttcccgcc gagtacacgg gtcccgatat cgagatcggt ttcaatgccc aatacctgct
 187      1621 cgatttcctg cgtgcgattt ctcaggatca cgttgccttc gaattgaagg atcaaaaaag
 188      1681 cgcgggcgaa ctccgtcccg ccggcgatgc catcgcggac cagtaccgct atgtagtcat
 189      1741 gccgatgcgt atttgaagtt tagtcaaacc agtaaggaac tatgccaaac gaagtcaatc
 190      1801 ccgtcggggg aaatggaaac gtctacgatt ccagcagtat caaagtcctg gaaggcctcg
 191      1861 aagcagtgcg cctgcgccct gccatgtaca tcgggtctac aggcgagatg gggctgcacc
 192      1921 atctggtcta tgaggtcgtc gataattccg tcgatgaagc tctagccggc tacgccaccc
 193      1981 atatcgaggt gacgatccac g
 194 //
 195