Added more missing 'Data::Stag' and 'LWP::UserAgent' requirements
[bioperl-live.git] / models / popgen.dia
blob4514bbf194dce1b1bf020bc690c60090da6da7af
1 <?xml version="1.0" encoding="UTF-8"?>
2 <dia:diagram xmlns:dia="http://www.lysator.liu.se/~alla/dia/">
3 <dia:diagramdata>
4 <dia:attribute name="background">
5 <dia:color val="#ffffff"/>
6 </dia:attribute>
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8 <dia:color val="#000099"/>
9 </dia:attribute>
10 <dia:attribute name="paper">
11 <dia:composite type="paper">
12 <dia:attribute name="name">
13 <dia:string>#A4#</dia:string>
14 </dia:attribute>
15 <dia:attribute name="tmargin">
16 <dia:real val="2.82"/>
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18 <dia:attribute name="bmargin">
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21 <dia:attribute name="lmargin">
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24 <dia:attribute name="rmargin">
25 <dia:real val="2.82"/>
26 </dia:attribute>
27 <dia:attribute name="is_portrait">
28 <dia:boolean val="false"/>
29 </dia:attribute>
30 <dia:attribute name="scaling">
31 <dia:real val="0.265177"/>
32 </dia:attribute>
33 <dia:attribute name="fitto">
34 <dia:boolean val="true"/>
35 </dia:attribute>
36 <dia:attribute name="fitwidth">
37 <dia:int val="1"/>
38 </dia:attribute>
39 <dia:attribute name="fitheight">
40 <dia:int val="1"/>
41 </dia:attribute>
42 </dia:composite>
43 </dia:attribute>
44 <dia:attribute name="grid">
45 <dia:composite type="grid">
46 <dia:attribute name="width_x">
47 <dia:real val="1"/>
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49 <dia:attribute name="width_y">
50 <dia:real val="1"/>
51 </dia:attribute>
52 <dia:attribute name="visible_x">
53 <dia:int val="1"/>
54 </dia:attribute>
55 <dia:attribute name="visible_y">
56 <dia:int val="1"/>
57 </dia:attribute>
58 <dia:composite type="color"/>
59 </dia:composite>
60 </dia:attribute>
61 <dia:attribute name="color">
62 <dia:color val="#d8e5e5"/>
63 </dia:attribute>
64 <dia:attribute name="guides">
65 <dia:composite type="guides">
66 <dia:attribute name="hguides"/>
67 <dia:attribute name="vguides"/>
68 </dia:composite>
69 </dia:attribute>
70 </dia:diagramdata>
71 <dia:layer name="Background" visible="true">
72 <dia:object type="UML - LargePackage" version="0" id="O0">
73 <dia:attribute name="obj_pos">
74 <dia:point val="-42.4451,-26.8545"/>
75 </dia:attribute>
76 <dia:attribute name="obj_bb">
77 <dia:rectangle val="-42.4951,-27.9045;48.2367,5.431"/>
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79 <dia:attribute name="elem_corner">
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82 <dia:attribute name="elem_width">
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84 </dia:attribute>
85 <dia:attribute name="elem_height">
86 <dia:real val="32.2355"/>
87 </dia:attribute>
88 <dia:attribute name="stereotype">
89 <dia:string>##</dia:string>
90 </dia:attribute>
91 <dia:attribute name="name">
92 <dia:string>#Bio::PopGen#</dia:string>
93 </dia:attribute>
94 </dia:object>
95 <dia:object type="Standard - Box" version="0" id="O1">
96 <dia:attribute name="obj_pos">
97 <dia:point val="-42.4451,-26.8545"/>
98 </dia:attribute>
99 <dia:attribute name="obj_bb">
100 <dia:rectangle val="-42.4951,-26.9045;48.1875,5.431"/>
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102 <dia:attribute name="elem_corner">
103 <dia:point val="-42.4451,-26.8545"/>
104 </dia:attribute>
105 <dia:attribute name="elem_width">
106 <dia:real val="90.5826"/>
107 </dia:attribute>
108 <dia:attribute name="elem_height">
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110 </dia:attribute>
111 <dia:attribute name="inner_color">
112 <dia:color val="#e5e5e5"/>
113 </dia:attribute>
114 <dia:attribute name="show_background">
115 <dia:boolean val="true"/>
116 </dia:attribute>
117 </dia:object>
118 <dia:object type="UML - Class" version="0" id="O2">
119 <dia:attribute name="obj_pos">
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122 <dia:attribute name="obj_bb">
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128 <dia:attribute name="elem_width">
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131 <dia:attribute name="elem_height">
132 <dia:real val="14.6"/>
133 </dia:attribute>
134 <dia:attribute name="name">
135 <dia:string>#Bio::PopGen::Population#</dia:string>
136 </dia:attribute>
137 <dia:attribute name="stereotype">
138 <dia:string>##</dia:string>
139 </dia:attribute>
140 <dia:attribute name="comment">
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146 <dia:attribute name="suppress_attributes">
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148 </dia:attribute>
149 <dia:attribute name="suppress_operations">
150 <dia:boolean val="false"/>
151 </dia:attribute>
152 <dia:attribute name="visible_attributes">
153 <dia:boolean val="true"/>
154 </dia:attribute>
155 <dia:attribute name="visible_operations">
156 <dia:boolean val="true"/>
157 </dia:attribute>
158 <dia:attribute name="visible_comments">
159 <dia:boolean val="false"/>
160 </dia:attribute>
161 <dia:attribute name="foreground_color">
162 <dia:color val="#000000"/>
163 </dia:attribute>
164 <dia:attribute name="background_color">
165 <dia:color val="#ffffff"/>
166 </dia:attribute>
167 <dia:attribute name="normal_font">
168 <dia:font family="courier new" style="0" name="Courier"/>
169 </dia:attribute>
170 <dia:attribute name="abstract_font">
171 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
172 </dia:attribute>
173 <dia:attribute name="polymorphic_font">
174 <dia:font family="monospace" style="8" name="Courier"/>
175 </dia:attribute>
176 <dia:attribute name="classname_font">
177 <dia:font family="arial" style="80" name="Helvetica-Bold"/>
178 </dia:attribute>
179 <dia:attribute name="abstract_classname_font">
180 <dia:font family="Arial" style="84" name="Helvetica-BoldOblique"/>
181 </dia:attribute>
182 <dia:attribute name="comment_font">
183 <dia:font family="sans" style="8" name="Helvetica"/>
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185 <dia:attribute name="font_height">
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194 <dia:attribute name="classname_font_height">
195 <dia:real val="1"/>
196 </dia:attribute>
197 <dia:attribute name="abstract_classname_font_height">
198 <dia:real val="1"/>
199 </dia:attribute>
200 <dia:attribute name="comment_font_height">
201 <dia:real val="1"/>
202 </dia:attribute>
203 <dia:attribute name="attributes">
204 <dia:composite type="umlattribute">
205 <dia:attribute name="name">
206 <dia:string>#self#</dia:string>
207 </dia:attribute>
208 <dia:attribute name="type">
209 <dia:string>##</dia:string>
210 </dia:attribute>
211 <dia:attribute name="value">
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214 <dia:attribute name="comment">
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216 </dia:attribute>
217 <dia:attribute name="visibility">
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221 <dia:boolean val="false"/>
222 </dia:attribute>
223 <dia:attribute name="class_scope">
224 <dia:boolean val="false"/>
225 </dia:attribute>
226 </dia:composite>
227 </dia:attribute>
228 <dia:attribute name="operations">
229 <dia:composite type="umloperation">
230 <dia:attribute name="name">
231 <dia:string>#new#</dia:string>
232 </dia:attribute>
233 <dia:attribute name="stereotype">
234 <dia:string>##</dia:string>
235 </dia:attribute>
236 <dia:attribute name="type">
237 <dia:string>##</dia:string>
238 </dia:attribute>
239 <dia:attribute name="visibility">
240 <dia:enum val="0"/>
241 </dia:attribute>
242 <dia:attribute name="comment">
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244 </dia:attribute>
245 <dia:attribute name="abstract">
246 <dia:boolean val="false"/>
247 </dia:attribute>
248 <dia:attribute name="inheritance_type">
249 <dia:enum val="2"/>
250 </dia:attribute>
251 <dia:attribute name="query">
252 <dia:boolean val="false"/>
253 </dia:attribute>
254 <dia:attribute name="class_scope">
255 <dia:boolean val="false"/>
256 </dia:attribute>
257 <dia:attribute name="parameters"/>
258 </dia:composite>
259 <dia:composite type="umloperation">
260 <dia:attribute name="name">
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262 </dia:attribute>
263 <dia:attribute name="stereotype">
264 <dia:string>##</dia:string>
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266 <dia:attribute name="type">
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269 <dia:attribute name="visibility">
270 <dia:enum val="0"/>
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272 <dia:attribute name="comment">
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293 <dia:attribute name="stereotype">
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299 <dia:attribute name="visibility">
300 <dia:enum val="0"/>
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302 <dia:attribute name="comment">
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305 <dia:attribute name="abstract">
306 <dia:boolean val="false"/>
307 </dia:attribute>
308 <dia:attribute name="inheritance_type">
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311 <dia:attribute name="query">
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314 <dia:attribute name="class_scope">
315 <dia:boolean val="false"/>
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317 <dia:attribute name="parameters"/>
318 </dia:composite>
319 <dia:composite type="umloperation">
320 <dia:attribute name="name">
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322 </dia:attribute>
323 <dia:attribute name="stereotype">
324 <dia:string>##</dia:string>
325 </dia:attribute>
326 <dia:attribute name="type">
327 <dia:string>##</dia:string>
328 </dia:attribute>
329 <dia:attribute name="visibility">
330 <dia:enum val="0"/>
331 </dia:attribute>
332 <dia:attribute name="comment">
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335 <dia:attribute name="abstract">
336 <dia:boolean val="false"/>
337 </dia:attribute>
338 <dia:attribute name="inheritance_type">
339 <dia:enum val="2"/>
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341 <dia:attribute name="query">
342 <dia:boolean val="false"/>
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344 <dia:attribute name="class_scope">
345 <dia:boolean val="false"/>
346 </dia:attribute>
347 <dia:attribute name="parameters"/>
348 </dia:composite>
349 <dia:composite type="umloperation">
350 <dia:attribute name="name">
351 <dia:string>#set_Allele_Frequency#</dia:string>
352 </dia:attribute>
353 <dia:attribute name="stereotype">
354 <dia:string>##</dia:string>
355 </dia:attribute>
356 <dia:attribute name="type">
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358 </dia:attribute>
359 <dia:attribute name="visibility">
360 <dia:enum val="0"/>
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362 <dia:attribute name="comment">
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366 <dia:boolean val="false"/>
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371 <dia:attribute name="query">
372 <dia:boolean val="false"/>
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374 <dia:attribute name="class_scope">
375 <dia:boolean val="false"/>
376 </dia:attribute>
377 <dia:attribute name="parameters"/>
378 </dia:composite>
379 <dia:composite type="umloperation">
380 <dia:attribute name="name">
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382 </dia:attribute>
383 <dia:attribute name="stereotype">
384 <dia:string>##</dia:string>
385 </dia:attribute>
386 <dia:attribute name="type">
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388 </dia:attribute>
389 <dia:attribute name="visibility">
390 <dia:enum val="0"/>
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392 <dia:attribute name="comment">
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404 <dia:attribute name="class_scope">
405 <dia:boolean val="false"/>
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407 <dia:attribute name="parameters"/>
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409 <dia:composite type="umloperation">
410 <dia:attribute name="name">
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416 <dia:attribute name="type">
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619 <dia:composite type="umloperation">
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735 <dia:font family="courier new" style="0" name="Courier"/>
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738 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
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740 <dia:attribute name="polymorphic_font">
741 <dia:font family="monospace" style="8" name="Courier"/>
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836 <dia:attribute name="stereotype">
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860 <dia:attribute name="parameters"/>
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866 <dia:attribute name="stereotype">
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965 <dia:attribute name="comment">
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980 <dia:attribute name="parameters"/>
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1010 <dia:attribute name="parameters"/>
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1072 <dia:composite type="umloperation">
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1102 <dia:composite type="umloperation">
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1104 <dia:string>#composite_LD#</dia:string>
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1106 <dia:attribute name="stereotype">
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1397 <dia:attribute name="parameters"/>
1398 </dia:composite>
1399 <dia:composite type="umloperation">
1400 <dia:attribute name="name">
1401 <dia:string>#get_Alleles#</dia:string>
1402 </dia:attribute>
1403 <dia:attribute name="stereotype">
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1405 </dia:attribute>
1406 <dia:attribute name="type">
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1409 <dia:attribute name="visibility">
1410 <dia:enum val="0"/>
1411 </dia:attribute>
1412 <dia:attribute name="comment">
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1415 <dia:attribute name="abstract">
1416 <dia:boolean val="false"/>
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1418 <dia:attribute name="inheritance_type">
1419 <dia:enum val="2"/>
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1421 <dia:attribute name="query">
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1424 <dia:attribute name="class_scope">
1425 <dia:boolean val="false"/>
1426 </dia:attribute>
1427 <dia:attribute name="parameters"/>
1428 </dia:composite>
1429 <dia:composite type="umloperation">
1430 <dia:attribute name="name">
1431 <dia:string>#get_Allele_Frequencies#</dia:string>
1432 </dia:attribute>
1433 <dia:attribute name="stereotype">
1434 <dia:string>##</dia:string>
1435 </dia:attribute>
1436 <dia:attribute name="type">
1437 <dia:string>##</dia:string>
1438 </dia:attribute>
1439 <dia:attribute name="visibility">
1440 <dia:enum val="0"/>
1441 </dia:attribute>
1442 <dia:attribute name="comment">
1443 <dia:string>##</dia:string>
1444 </dia:attribute>
1445 <dia:attribute name="abstract">
1446 <dia:boolean val="false"/>
1447 </dia:attribute>
1448 <dia:attribute name="inheritance_type">
1449 <dia:enum val="2"/>
1450 </dia:attribute>
1451 <dia:attribute name="query">
1452 <dia:boolean val="false"/>
1453 </dia:attribute>
1454 <dia:attribute name="class_scope">
1455 <dia:boolean val="false"/>
1456 </dia:attribute>
1457 <dia:attribute name="parameters"/>
1458 </dia:composite>
1459 <dia:composite type="umloperation">
1460 <dia:attribute name="name">
1461 <dia:string>#add_Allele_Frequency#</dia:string>
1462 </dia:attribute>
1463 <dia:attribute name="stereotype">
1464 <dia:string>##</dia:string>
1465 </dia:attribute>
1466 <dia:attribute name="type">
1467 <dia:string>##</dia:string>
1468 </dia:attribute>
1469 <dia:attribute name="visibility">
1470 <dia:enum val="0"/>
1471 </dia:attribute>
1472 <dia:attribute name="comment">
1473 <dia:string>##</dia:string>
1474 </dia:attribute>
1475 <dia:attribute name="abstract">
1476 <dia:boolean val="false"/>
1477 </dia:attribute>
1478 <dia:attribute name="inheritance_type">
1479 <dia:enum val="2"/>
1480 </dia:attribute>
1481 <dia:attribute name="query">
1482 <dia:boolean val="false"/>
1483 </dia:attribute>
1484 <dia:attribute name="class_scope">
1485 <dia:boolean val="false"/>
1486 </dia:attribute>
1487 <dia:attribute name="parameters"/>
1488 </dia:composite>
1489 <dia:composite type="umloperation">
1490 <dia:attribute name="name">
1491 <dia:string>#reset_alleles#</dia:string>
1492 </dia:attribute>
1493 <dia:attribute name="stereotype">
1494 <dia:string>##</dia:string>
1495 </dia:attribute>
1496 <dia:attribute name="type">
1497 <dia:string>##</dia:string>
1498 </dia:attribute>
1499 <dia:attribute name="visibility">
1500 <dia:enum val="0"/>
1501 </dia:attribute>
1502 <dia:attribute name="comment">
1503 <dia:string>##</dia:string>
1504 </dia:attribute>
1505 <dia:attribute name="abstract">
1506 <dia:boolean val="false"/>
1507 </dia:attribute>
1508 <dia:attribute name="inheritance_type">
1509 <dia:enum val="2"/>
1510 </dia:attribute>
1511 <dia:attribute name="query">
1512 <dia:boolean val="false"/>
1513 </dia:attribute>
1514 <dia:attribute name="class_scope">
1515 <dia:boolean val="false"/>
1516 </dia:attribute>
1517 <dia:attribute name="parameters"/>
1518 </dia:composite>
1519 </dia:attribute>
1520 <dia:attribute name="template">
1521 <dia:boolean val="false"/>
1522 </dia:attribute>
1523 <dia:attribute name="templates"/>
1524 </dia:object>
1525 <dia:object type="UML - Class" version="0" id="O5">
1526 <dia:attribute name="obj_pos">
1527 <dia:point val="33.9341,-13.7765"/>
1528 </dia:attribute>
1529 <dia:attribute name="obj_bb">
1530 <dia:rectangle val="33.8841,-13.8265;43.3341,-3.9265"/>
1531 </dia:attribute>
1532 <dia:attribute name="elem_corner">
1533 <dia:point val="33.9341,-13.7765"/>
1534 </dia:attribute>
1535 <dia:attribute name="elem_width">
1536 <dia:real val="9.35"/>
1537 </dia:attribute>
1538 <dia:attribute name="elem_height">
1539 <dia:real val="9.8"/>
1540 </dia:attribute>
1541 <dia:attribute name="name">
1542 <dia:string>#Bio::PopGen::Individual#</dia:string>
1543 </dia:attribute>
1544 <dia:attribute name="stereotype">
1545 <dia:string>##</dia:string>
1546 </dia:attribute>
1547 <dia:attribute name="comment">
1548 <dia:string>##</dia:string>
1549 </dia:attribute>
1550 <dia:attribute name="abstract">
1551 <dia:boolean val="false"/>
1552 </dia:attribute>
1553 <dia:attribute name="suppress_attributes">
1554 <dia:boolean val="false"/>
1555 </dia:attribute>
1556 <dia:attribute name="suppress_operations">
1557 <dia:boolean val="false"/>
1558 </dia:attribute>
1559 <dia:attribute name="visible_attributes">
1560 <dia:boolean val="true"/>
1561 </dia:attribute>
1562 <dia:attribute name="visible_operations">
1563 <dia:boolean val="true"/>
1564 </dia:attribute>
1565 <dia:attribute name="visible_comments">
1566 <dia:boolean val="false"/>
1567 </dia:attribute>
1568 <dia:attribute name="foreground_color">
1569 <dia:color val="#000000"/>
1570 </dia:attribute>
1571 <dia:attribute name="background_color">
1572 <dia:color val="#ffffff"/>
1573 </dia:attribute>
1574 <dia:attribute name="normal_font">
1575 <dia:font family="courier new" style="0" name="Courier"/>
1576 </dia:attribute>
1577 <dia:attribute name="abstract_font">
1578 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
1579 </dia:attribute>
1580 <dia:attribute name="polymorphic_font">
1581 <dia:font family="monospace" style="8" name="Courier"/>
1582 </dia:attribute>
1583 <dia:attribute name="classname_font">
1584 <dia:font family="arial" style="80" name="Helvetica-Bold"/>
1585 </dia:attribute>
1586 <dia:attribute name="abstract_classname_font">
1587 <dia:font family="Arial" style="84" name="Helvetica-BoldOblique"/>
1588 </dia:attribute>
1589 <dia:attribute name="comment_font">
1590 <dia:font family="sans" style="8" name="Helvetica"/>
1591 </dia:attribute>
1592 <dia:attribute name="font_height">
1593 <dia:real val="0.8"/>
1594 </dia:attribute>
1595 <dia:attribute name="polymorphic_font_height">
1596 <dia:real val="0.8"/>
1597 </dia:attribute>
1598 <dia:attribute name="abstract_font_height">
1599 <dia:real val="0.8"/>
1600 </dia:attribute>
1601 <dia:attribute name="classname_font_height">
1602 <dia:real val="1"/>
1603 </dia:attribute>
1604 <dia:attribute name="abstract_classname_font_height">
1605 <dia:real val="1"/>
1606 </dia:attribute>
1607 <dia:attribute name="comment_font_height">
1608 <dia:real val="1"/>
1609 </dia:attribute>
1610 <dia:attribute name="attributes">
1611 <dia:composite type="umlattribute">
1612 <dia:attribute name="name">
1613 <dia:string>#self#</dia:string>
1614 </dia:attribute>
1615 <dia:attribute name="type">
1616 <dia:string>##</dia:string>
1617 </dia:attribute>
1618 <dia:attribute name="value">
1619 <dia:string>##</dia:string>
1620 </dia:attribute>
1621 <dia:attribute name="comment">
1622 <dia:string>##</dia:string>
1623 </dia:attribute>
1624 <dia:attribute name="visibility">
1625 <dia:enum val="0"/>
1626 </dia:attribute>
1627 <dia:attribute name="abstract">
1628 <dia:boolean val="false"/>
1629 </dia:attribute>
1630 <dia:attribute name="class_scope">
1631 <dia:boolean val="false"/>
1632 </dia:attribute>
1633 </dia:composite>
1634 </dia:attribute>
1635 <dia:attribute name="operations">
1636 <dia:composite type="umloperation">
1637 <dia:attribute name="name">
1638 <dia:string>#new#</dia:string>
1639 </dia:attribute>
1640 <dia:attribute name="stereotype">
1641 <dia:string>##</dia:string>
1642 </dia:attribute>
1643 <dia:attribute name="type">
1644 <dia:string>##</dia:string>
1645 </dia:attribute>
1646 <dia:attribute name="visibility">
1647 <dia:enum val="0"/>
1648 </dia:attribute>
1649 <dia:attribute name="comment">
1650 <dia:string>##</dia:string>
1651 </dia:attribute>
1652 <dia:attribute name="abstract">
1653 <dia:boolean val="false"/>
1654 </dia:attribute>
1655 <dia:attribute name="inheritance_type">
1656 <dia:enum val="2"/>
1657 </dia:attribute>
1658 <dia:attribute name="query">
1659 <dia:boolean val="false"/>
1660 </dia:attribute>
1661 <dia:attribute name="class_scope">
1662 <dia:boolean val="false"/>
1663 </dia:attribute>
1664 <dia:attribute name="parameters"/>
1665 </dia:composite>
1666 <dia:composite type="umloperation">
1667 <dia:attribute name="name">
1668 <dia:string>#unique_id#</dia:string>
1669 </dia:attribute>
1670 <dia:attribute name="stereotype">
1671 <dia:string>##</dia:string>
1672 </dia:attribute>
1673 <dia:attribute name="type">
1674 <dia:string>##</dia:string>
1675 </dia:attribute>
1676 <dia:attribute name="visibility">
1677 <dia:enum val="0"/>
1678 </dia:attribute>
1679 <dia:attribute name="comment">
1680 <dia:string>##</dia:string>
1681 </dia:attribute>
1682 <dia:attribute name="abstract">
1683 <dia:boolean val="false"/>
1684 </dia:attribute>
1685 <dia:attribute name="inheritance_type">
1686 <dia:enum val="2"/>
1687 </dia:attribute>
1688 <dia:attribute name="query">
1689 <dia:boolean val="false"/>
1690 </dia:attribute>
1691 <dia:attribute name="class_scope">
1692 <dia:boolean val="false"/>
1693 </dia:attribute>
1694 <dia:attribute name="parameters"/>
1695 </dia:composite>
1696 <dia:composite type="umloperation">
1697 <dia:attribute name="name">
1698 <dia:string>#num_of_results#</dia:string>
1699 </dia:attribute>
1700 <dia:attribute name="stereotype">
1701 <dia:string>##</dia:string>
1702 </dia:attribute>
1703 <dia:attribute name="type">
1704 <dia:string>##</dia:string>
1705 </dia:attribute>
1706 <dia:attribute name="visibility">
1707 <dia:enum val="0"/>
1708 </dia:attribute>
1709 <dia:attribute name="comment">
1710 <dia:string>##</dia:string>
1711 </dia:attribute>
1712 <dia:attribute name="abstract">
1713 <dia:boolean val="false"/>
1714 </dia:attribute>
1715 <dia:attribute name="inheritance_type">
1716 <dia:enum val="2"/>
1717 </dia:attribute>
1718 <dia:attribute name="query">
1719 <dia:boolean val="false"/>
1720 </dia:attribute>
1721 <dia:attribute name="class_scope">
1722 <dia:boolean val="false"/>
1723 </dia:attribute>
1724 <dia:attribute name="parameters"/>
1725 </dia:composite>
1726 <dia:composite type="umloperation">
1727 <dia:attribute name="name">
1728 <dia:string>#add_Genotype#</dia:string>
1729 </dia:attribute>
1730 <dia:attribute name="stereotype">
1731 <dia:string>##</dia:string>
1732 </dia:attribute>
1733 <dia:attribute name="type">
1734 <dia:string>##</dia:string>
1735 </dia:attribute>
1736 <dia:attribute name="visibility">
1737 <dia:enum val="0"/>
1738 </dia:attribute>
1739 <dia:attribute name="comment">
1740 <dia:string>##</dia:string>
1741 </dia:attribute>
1742 <dia:attribute name="abstract">
1743 <dia:boolean val="false"/>
1744 </dia:attribute>
1745 <dia:attribute name="inheritance_type">
1746 <dia:enum val="2"/>
1747 </dia:attribute>
1748 <dia:attribute name="query">
1749 <dia:boolean val="false"/>
1750 </dia:attribute>
1751 <dia:attribute name="class_scope">
1752 <dia:boolean val="false"/>
1753 </dia:attribute>
1754 <dia:attribute name="parameters"/>
1755 </dia:composite>
1756 <dia:composite type="umloperation">
1757 <dia:attribute name="name">
1758 <dia:string>#reset_Genotypes#</dia:string>
1759 </dia:attribute>
1760 <dia:attribute name="stereotype">
1761 <dia:string>##</dia:string>
1762 </dia:attribute>
1763 <dia:attribute name="type">
1764 <dia:string>##</dia:string>
1765 </dia:attribute>
1766 <dia:attribute name="visibility">
1767 <dia:enum val="0"/>
1768 </dia:attribute>
1769 <dia:attribute name="comment">
1770 <dia:string>##</dia:string>
1771 </dia:attribute>
1772 <dia:attribute name="abstract">
1773 <dia:boolean val="false"/>
1774 </dia:attribute>
1775 <dia:attribute name="inheritance_type">
1776 <dia:enum val="2"/>
1777 </dia:attribute>
1778 <dia:attribute name="query">
1779 <dia:boolean val="false"/>
1780 </dia:attribute>
1781 <dia:attribute name="class_scope">
1782 <dia:boolean val="false"/>
1783 </dia:attribute>
1784 <dia:attribute name="parameters"/>
1785 </dia:composite>
1786 <dia:composite type="umloperation">
1787 <dia:attribute name="name">
1788 <dia:string>#remove_Genotype#</dia:string>
1789 </dia:attribute>
1790 <dia:attribute name="stereotype">
1791 <dia:string>##</dia:string>
1792 </dia:attribute>
1793 <dia:attribute name="type">
1794 <dia:string>##</dia:string>
1795 </dia:attribute>
1796 <dia:attribute name="visibility">
1797 <dia:enum val="0"/>
1798 </dia:attribute>
1799 <dia:attribute name="comment">
1800 <dia:string>##</dia:string>
1801 </dia:attribute>
1802 <dia:attribute name="abstract">
1803 <dia:boolean val="false"/>
1804 </dia:attribute>
1805 <dia:attribute name="inheritance_type">
1806 <dia:enum val="2"/>
1807 </dia:attribute>
1808 <dia:attribute name="query">
1809 <dia:boolean val="false"/>
1810 </dia:attribute>
1811 <dia:attribute name="class_scope">
1812 <dia:boolean val="false"/>
1813 </dia:attribute>
1814 <dia:attribute name="parameters"/>
1815 </dia:composite>
1816 <dia:composite type="umloperation">
1817 <dia:attribute name="name">
1818 <dia:string>#get_Genotypes#</dia:string>
1819 </dia:attribute>
1820 <dia:attribute name="stereotype">
1821 <dia:string>##</dia:string>
1822 </dia:attribute>
1823 <dia:attribute name="type">
1824 <dia:string>##</dia:string>
1825 </dia:attribute>
1826 <dia:attribute name="visibility">
1827 <dia:enum val="0"/>
1828 </dia:attribute>
1829 <dia:attribute name="comment">
1830 <dia:string>##</dia:string>
1831 </dia:attribute>
1832 <dia:attribute name="abstract">
1833 <dia:boolean val="false"/>
1834 </dia:attribute>
1835 <dia:attribute name="inheritance_type">
1836 <dia:enum val="2"/>
1837 </dia:attribute>
1838 <dia:attribute name="query">
1839 <dia:boolean val="false"/>
1840 </dia:attribute>
1841 <dia:attribute name="class_scope">
1842 <dia:boolean val="false"/>
1843 </dia:attribute>
1844 <dia:attribute name="parameters"/>
1845 </dia:composite>
1846 <dia:composite type="umloperation">
1847 <dia:attribute name="name">
1848 <dia:string>#has_Marker#</dia:string>
1849 </dia:attribute>
1850 <dia:attribute name="stereotype">
1851 <dia:string>##</dia:string>
1852 </dia:attribute>
1853 <dia:attribute name="type">
1854 <dia:string>##</dia:string>
1855 </dia:attribute>
1856 <dia:attribute name="visibility">
1857 <dia:enum val="0"/>
1858 </dia:attribute>
1859 <dia:attribute name="comment">
1860 <dia:string>##</dia:string>
1861 </dia:attribute>
1862 <dia:attribute name="abstract">
1863 <dia:boolean val="false"/>
1864 </dia:attribute>
1865 <dia:attribute name="inheritance_type">
1866 <dia:enum val="2"/>
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1868 <dia:attribute name="query">
1869 <dia:boolean val="false"/>
1870 </dia:attribute>
1871 <dia:attribute name="class_scope">
1872 <dia:boolean val="false"/>
1873 </dia:attribute>
1874 <dia:attribute name="parameters"/>
1875 </dia:composite>
1876 <dia:composite type="umloperation">
1877 <dia:attribute name="name">
1878 <dia:string>#get_marker_names#</dia:string>
1879 </dia:attribute>
1880 <dia:attribute name="stereotype">
1881 <dia:string>##</dia:string>
1882 </dia:attribute>
1883 <dia:attribute name="type">
1884 <dia:string>##</dia:string>
1885 </dia:attribute>
1886 <dia:attribute name="visibility">
1887 <dia:enum val="0"/>
1888 </dia:attribute>
1889 <dia:attribute name="comment">
1890 <dia:string>##</dia:string>
1891 </dia:attribute>
1892 <dia:attribute name="abstract">
1893 <dia:boolean val="false"/>
1894 </dia:attribute>
1895 <dia:attribute name="inheritance_type">
1896 <dia:enum val="2"/>
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1898 <dia:attribute name="query">
1899 <dia:boolean val="false"/>
1900 </dia:attribute>
1901 <dia:attribute name="class_scope">
1902 <dia:boolean val="false"/>
1903 </dia:attribute>
1904 <dia:attribute name="parameters"/>
1905 </dia:composite>
1906 </dia:attribute>
1907 <dia:attribute name="template">
1908 <dia:boolean val="false"/>
1909 </dia:attribute>
1910 <dia:attribute name="templates"/>
1911 </dia:object>
1912 <dia:object type="UML - Class" version="0" id="O6">
1913 <dia:attribute name="obj_pos">
1914 <dia:point val="-40.4856,-1.10183"/>
1915 </dia:attribute>
1916 <dia:attribute name="obj_bb">
1917 <dia:rectangle val="-40.5356,-1.15183;-31.3356,3.94817"/>
1918 </dia:attribute>
1919 <dia:attribute name="elem_corner">
1920 <dia:point val="-40.4856,-1.10183"/>
1921 </dia:attribute>
1922 <dia:attribute name="elem_width">
1923 <dia:real val="9.1"/>
1924 </dia:attribute>
1925 <dia:attribute name="elem_height">
1926 <dia:real val="5"/>
1927 </dia:attribute>
1928 <dia:attribute name="name">
1929 <dia:string>#Bio::PopGen::PopStats#</dia:string>
1930 </dia:attribute>
1931 <dia:attribute name="stereotype">
1932 <dia:string>##</dia:string>
1933 </dia:attribute>
1934 <dia:attribute name="comment">
1935 <dia:string>##</dia:string>
1936 </dia:attribute>
1937 <dia:attribute name="abstract">
1938 <dia:boolean val="false"/>
1939 </dia:attribute>
1940 <dia:attribute name="suppress_attributes">
1941 <dia:boolean val="false"/>
1942 </dia:attribute>
1943 <dia:attribute name="suppress_operations">
1944 <dia:boolean val="false"/>
1945 </dia:attribute>
1946 <dia:attribute name="visible_attributes">
1947 <dia:boolean val="true"/>
1948 </dia:attribute>
1949 <dia:attribute name="visible_operations">
1950 <dia:boolean val="true"/>
1951 </dia:attribute>
1952 <dia:attribute name="visible_comments">
1953 <dia:boolean val="false"/>
1954 </dia:attribute>
1955 <dia:attribute name="foreground_color">
1956 <dia:color val="#000000"/>
1957 </dia:attribute>
1958 <dia:attribute name="background_color">
1959 <dia:color val="#ffffff"/>
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1961 <dia:attribute name="normal_font">
1962 <dia:font family="courier new" style="0" name="Courier"/>
1963 </dia:attribute>
1964 <dia:attribute name="abstract_font">
1965 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
1966 </dia:attribute>
1967 <dia:attribute name="polymorphic_font">
1968 <dia:font family="monospace" style="8" name="Courier"/>
1969 </dia:attribute>
1970 <dia:attribute name="classname_font">
1971 <dia:font family="arial" style="80" name="Helvetica-Bold"/>
1972 </dia:attribute>
1973 <dia:attribute name="abstract_classname_font">
1974 <dia:font family="Arial" style="84" name="Helvetica-BoldOblique"/>
1975 </dia:attribute>
1976 <dia:attribute name="comment_font">
1977 <dia:font family="sans" style="8" name="Helvetica"/>
1978 </dia:attribute>
1979 <dia:attribute name="font_height">
1980 <dia:real val="0.8"/>
1981 </dia:attribute>
1982 <dia:attribute name="polymorphic_font_height">
1983 <dia:real val="0.8"/>
1984 </dia:attribute>
1985 <dia:attribute name="abstract_font_height">
1986 <dia:real val="0.8"/>
1987 </dia:attribute>
1988 <dia:attribute name="classname_font_height">
1989 <dia:real val="1"/>
1990 </dia:attribute>
1991 <dia:attribute name="abstract_classname_font_height">
1992 <dia:real val="1"/>
1993 </dia:attribute>
1994 <dia:attribute name="comment_font_height">
1995 <dia:real val="1"/>
1996 </dia:attribute>
1997 <dia:attribute name="attributes">
1998 <dia:composite type="umlattribute">
1999 <dia:attribute name="name">
2000 <dia:string>#self#</dia:string>
2001 </dia:attribute>
2002 <dia:attribute name="type">
2003 <dia:string>##</dia:string>
2004 </dia:attribute>
2005 <dia:attribute name="value">
2006 <dia:string>##</dia:string>
2007 </dia:attribute>
2008 <dia:attribute name="comment">
2009 <dia:string>##</dia:string>
2010 </dia:attribute>
2011 <dia:attribute name="visibility">
2012 <dia:enum val="0"/>
2013 </dia:attribute>
2014 <dia:attribute name="abstract">
2015 <dia:boolean val="false"/>
2016 </dia:attribute>
2017 <dia:attribute name="class_scope">
2018 <dia:boolean val="false"/>
2019 </dia:attribute>
2020 </dia:composite>
2021 </dia:attribute>
2022 <dia:attribute name="operations">
2023 <dia:composite type="umloperation">
2024 <dia:attribute name="name">
2025 <dia:string>#new#</dia:string>
2026 </dia:attribute>
2027 <dia:attribute name="stereotype">
2028 <dia:string>##</dia:string>
2029 </dia:attribute>
2030 <dia:attribute name="type">
2031 <dia:string>##</dia:string>
2032 </dia:attribute>
2033 <dia:attribute name="visibility">
2034 <dia:enum val="0"/>
2035 </dia:attribute>
2036 <dia:attribute name="comment">
2037 <dia:string>##</dia:string>
2038 </dia:attribute>
2039 <dia:attribute name="abstract">
2040 <dia:boolean val="false"/>
2041 </dia:attribute>
2042 <dia:attribute name="inheritance_type">
2043 <dia:enum val="2"/>
2044 </dia:attribute>
2045 <dia:attribute name="query">
2046 <dia:boolean val="false"/>
2047 </dia:attribute>
2048 <dia:attribute name="class_scope">
2049 <dia:boolean val="false"/>
2050 </dia:attribute>
2051 <dia:attribute name="parameters"/>
2052 </dia:composite>
2053 <dia:composite type="umloperation">
2054 <dia:attribute name="name">
2055 <dia:string>#haploid_status#</dia:string>
2056 </dia:attribute>
2057 <dia:attribute name="stereotype">
2058 <dia:string>##</dia:string>
2059 </dia:attribute>
2060 <dia:attribute name="type">
2061 <dia:string>##</dia:string>
2062 </dia:attribute>
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3046 <dia:composite type="umloperation">
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3048 <dia:string>#DESTROY#</dia:string>
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3074 <dia:attribute name="parameters"/>
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3076 <dia:composite type="umloperation">
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3439 <dia:composite type="umloperation">
3440 <dia:attribute name="name">
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3452 <dia:attribute name="comment">
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3467 <dia:attribute name="parameters"/>
3468 </dia:composite>
3469 <dia:composite type="umloperation">
3470 <dia:attribute name="name">
3471 <dia:string>#get_Markers#</dia:string>
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3482 <dia:attribute name="comment">
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3497 <dia:attribute name="parameters"/>
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3499 <dia:composite type="umloperation">
3500 <dia:attribute name="name">
3501 <dia:string>#get_number_individuals#</dia:string>
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3530 <dia:attribute name="template">
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3533 <dia:attribute name="templates"/>
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3536 <dia:attribute name="obj_pos">
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3540 <dia:rectangle val="33.7841,-25.2813;43.4341,-18.3813"/>
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3543 <dia:point val="33.8341,-25.2313"/>
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3545 <dia:attribute name="elem_width">
3546 <dia:real val="9.55"/>
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3548 <dia:attribute name="elem_height">
3549 <dia:real val="6.8"/>
3550 </dia:attribute>
3551 <dia:attribute name="name">
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3554 <dia:attribute name="stereotype">
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3557 <dia:attribute name="comment">
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3579 <dia:color val="#000000"/>
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3585 <dia:font family="courier new" style="0" name="Courier"/>
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3587 <dia:attribute name="abstract_font">
3588 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
3589 </dia:attribute>
3590 <dia:attribute name="polymorphic_font">
3591 <dia:font family="monospace" style="8" name="Courier"/>
3592 </dia:attribute>
3593 <dia:attribute name="classname_font">
3594 <dia:font family="arial" style="80" name="Helvetica-Bold"/>
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3599 <dia:attribute name="comment_font">
3600 <dia:font family="sans" style="8" name="Helvetica"/>
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3620 <dia:attribute name="attributes"/>
3621 <dia:attribute name="operations">
3622 <dia:composite type="umloperation">
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3624 <dia:string>#unique_id#</dia:string>
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3635 <dia:attribute name="comment">
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3650 <dia:attribute name="parameters"/>
3651 </dia:composite>
3652 <dia:composite type="umloperation">
3653 <dia:attribute name="name">
3654 <dia:string>#num_genotypes#</dia:string>
3655 </dia:attribute>
3656 <dia:attribute name="stereotype">
3657 <dia:string>##</dia:string>
3658 </dia:attribute>
3659 <dia:attribute name="type">
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3662 <dia:attribute name="visibility">
3663 <dia:enum val="0"/>
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3665 <dia:attribute name="comment">
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3680 <dia:attribute name="parameters"/>
3681 </dia:composite>
3682 <dia:composite type="umloperation">
3683 <dia:attribute name="name">
3684 <dia:string>#num_of_results#</dia:string>
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3686 <dia:attribute name="stereotype">
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3689 <dia:attribute name="type">
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3692 <dia:attribute name="visibility">
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3695 <dia:attribute name="comment">
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3710 <dia:attribute name="parameters"/>
3711 </dia:composite>
3712 <dia:composite type="umloperation">
3713 <dia:attribute name="name">
3714 <dia:string>#get_Genotypes#</dia:string>
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3719 <dia:attribute name="type">
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3740 <dia:attribute name="parameters"/>
3741 </dia:composite>
3742 <dia:composite type="umloperation">
3743 <dia:attribute name="name">
3744 <dia:string>#has_Marker#</dia:string>
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3746 <dia:attribute name="stereotype">
3747 <dia:string>##</dia:string>
3748 </dia:attribute>
3749 <dia:attribute name="type">
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3752 <dia:attribute name="visibility">
3753 <dia:enum val="0"/>
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3755 <dia:attribute name="comment">
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3770 <dia:attribute name="parameters"/>
3771 </dia:composite>
3772 <dia:composite type="umloperation">
3773 <dia:attribute name="name">
3774 <dia:string>#get_marker_names#</dia:string>
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3776 <dia:attribute name="stereotype">
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3779 <dia:attribute name="type">
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3782 <dia:attribute name="visibility">
3783 <dia:enum val="0"/>
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3785 <dia:attribute name="comment">
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3800 <dia:attribute name="parameters"/>
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3802 </dia:attribute>
3803 <dia:attribute name="template">
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3806 <dia:attribute name="templates"/>
3807 </dia:object>
3808 <dia:object type="UML - Class" version="0" id="O12">
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3810 <dia:point val="2.79832,-13.7765"/>
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3812 <dia:attribute name="obj_bb">
3813 <dia:rectangle val="2.74832,-13.8265;12.0983,-6.3265"/>
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3815 <dia:attribute name="elem_corner">
3816 <dia:point val="2.79832,-13.7765"/>
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3818 <dia:attribute name="elem_width">
3819 <dia:real val="9.25"/>
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3821 <dia:attribute name="elem_height">
3822 <dia:real val="7.4"/>
3823 </dia:attribute>
3824 <dia:attribute name="name">
3825 <dia:string>#Bio::PopGen::Genotype#</dia:string>
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3827 <dia:attribute name="stereotype">
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3830 <dia:attribute name="comment">
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3848 <dia:attribute name="visible_comments">
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3851 <dia:attribute name="foreground_color">
3852 <dia:color val="#000000"/>
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3854 <dia:attribute name="background_color">
3855 <dia:color val="#ffffff"/>
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3857 <dia:attribute name="normal_font">
3858 <dia:font family="courier new" style="0" name="Courier"/>
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3860 <dia:attribute name="abstract_font">
3861 <dia:font family="Courier New" style="4" name="Courier-Oblique"/>
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3863 <dia:attribute name="polymorphic_font">
3864 <dia:font family="monospace" style="8" name="Courier"/>
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3866 <dia:attribute name="classname_font">
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3893 <dia:attribute name="attributes">
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4059 <dia:enum val="2"/>
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4071 <dia:string>#reset_Alleles#</dia:string>
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4119 <dia:real val="2.2"/>
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4122 <dia:string>#Bio::AnnotatableI#</dia:string>
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4214 <dia:string>#Bio::Root::IO#</dia:string>
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4219 <dia:attribute name="comment">
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4393 <dia:attribute name="role">
4394 <dia:string>##</dia:string>
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4400 <dia:boolean val="false"/>
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4419 <dia:attribute name="text">
4420 <dia:composite type="text">
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4422 <dia:string>#Bio::PopGen#</dia:string>
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4425 <dia:font family="courier new" style="80" name="Courier-Bold"/>
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