9 env: PERL_CPANM_OPT="--notest --force --skip-satisfied"
12 #This should solve problem installing Perl's DB_File & GraphViz
13 - "sudo apt-get install libdb-dev graphviz libgd2-xpm-dev libxml2-dev 2>&1 | tail -n 4"
14 #These are recommended or required Perl libraries:
15 - "cpanm GD 2>&1 | tail -n 1"
16 - "cpanm HTML::TableExtract DBI Data::Stag DB_File 2>&1 | tail -n 1"
17 - "cpanm DBD::mysql DBD::Pg DBD::SQLite 2>&1 | tail -n 1"
18 - "cpanm Algorithm::Munkres Array::Compare Convert::Binary::C Error 2>&1 | tail -n 1"
19 - "cpanm Graph SVG SVG::Graph GraphViz 2>&1 | tail -n 1"
20 - "cpanm XML::DOM::XPath XML::Parser XML::Parser::PerlSAX 2>&1 | tail -n 1"
21 - "cpanm XML::SAX XML::SAX::Writer XML::Simple XML::LibXML XML::Twig XML::Writer 2>&1 | tail -n 1"
22 - "cpanm PostScript::TextBlock Set::Scalar Sort::Naturally YAML | tail -n 1"
23 - "cpanm Math::Random SOAP::Lite Spreadsheet::ParseExcel | tail -n 1"
24 - "cpanm Bio::ASN1::EntrezGene | tail -n 1"
25 - "cpanm Bio::Phylo | tail -n 1"
26 #for some reason tests and deps aren't skipped here. Will have to look into it more...
27 #git repos, seems to only work for simple checkouts, so pure perl only (TODO: look into before_script for more detail)
28 - "git clone https://github.com/bioperl/Bio-Root.git; export PERL5LIB=$( pwd )/Bio-Root/lib:$PERL5LIB"
29 #This installs BioPerl itself:
30 - "perl ./Build.PL --accept"
35 #TODO - send emails to bioperl-guts-l
39 - bioperl-guts-l@lists.open-bio.org