1 # -*-Perl-*- Test Harness script for Bioperl
10 test_begin(-tests => 7,
11 -requires_module => 'Bio::SeqIO::staden::read 1.52');
16 my $verbose = test_debug();
18 my $io = Bio::SeqIO->new(-format => 'abi',
20 -file => test_input_file('test.abi',),
21 -get_trace_data => 1);
22 my $seq = $io->next_seq;
23 isa_ok($seq, 'Bio::PrimarySeqI');
24 is($seq->seq, "GCNTATGACGTGGATTNCGAATTCTNNNNNCGGTAGNNGAAAATCCCCGGNCAAGNTTNNCCCTGCAAANGGAANAANNTGGCCGAGCGCTACGGGCTGATCTGGGTGTGCCTGTTTCCCCCGGCCGGGGGGAGNGATGCAGGACATCCAAGTATCCCGCCNATGGNGGGCTGAGGACGAGGACGGCTTCCATCAGATCAGTGTGCCCGGNCTTCGACATCGGCGGCAGCGCCGCGCGCCAACTGGAAGGCTTCATCGACGTGNAGCATTTTGNCTTCNTGCGCACCGCTACCTTCACCCANCCGGACAAGCGCNAANTGCNGNCCTACACCACCACNGAAACACCGACCGGNTTNAATGCCGATTACCTGAGNNGCGTGGCAAATTATTCGGNGGACNTGCCGCTGNCGGACGTGGACCCGAACTTCCAATGGCTGCGTCATTNCTAGGTGAATCTGCCTTTCACCGCCACGCTCACCATCCACTTCCCGGTGCCGGGCAAGCGGTTGGTGATNATGAATGCCGCCAGACCGGTGTCCAAGCACACCANCCGCCTGNTGGTGCCGATCGNCCGCTAATTTCGACACCCATCTGCCNGNGGGAAGACGTACATGNGTTCAACCTTGCACNTNGTTCNAAAAAAACCNTGCCATGGTGGNAANCGCAAGCGGNCCGGAAATATCNGCCGGNTTGACCCGCNTGNTTGGAAAGTGCATATTCCCCNCCGATNCNCAATTTCGAT");
25 # trace data points, only added if get_trace_data is invoked
26 is($seq->get_trace_graph( -trace => 'a' ), 8793);
27 is($seq->get_trace_graph( -trace => 't' ), 8793);
28 is($seq->get_trace_graph( -trace => 'g' ), 8793);
29 is($seq->get_trace_graph( -trace => 'c' ), 8793);