| blob | a7c6166c92d6aa98fadd2255b522dffc47d7d86d |
1 BioPerl Dependencies
3 NOTE : This file was auto-generated by the helper script
4 maintenance/dependencies.pl. Do not edit directly!
6 The following packages are used by BioPerl. While not all are required for
7 BioPerl to operate properly, some functionality will be missing without them.
8 You can easily choose to install all of these during the normal installation
9 process. Note that the PPM version of the BioPerl packages always tries to
10 install all dependencies.
12 The DBD::mysql, DB_File and XML::Parser modules require other applications or
13 databases: MySQL, Berkeley DB, and expat respectively.
15 NB: This list of packages is not authoritative. See the 'requires',
16 'build_requires' and 'recommends' sections of Build.PL instead.
18 ==============================================================================
19 | Distribution | Module used - Description | Min. ver. |
20 |---------------------------+--------------------------------------+-----------|
21 | AcePerl | * Ace - Interface to ACEDB (Popular | None |
22 | | Genome DB) | |
23 | | * Ace::Sequence::Homol - NA | |
24 |==============================================================================|
25 | Used by: |
26 |------------------------------------------------------------------------------|
27 | * Bio::DB::Ace - Ace |
28 | * Bio::DB::GFF::Adaptor::ace - Ace |
29 | * Bio::DB::GFF::Adaptor::dbi::mysqlace - Ace::Sequence::Homol |
30 | * Bio::DB::GFF::Adaptor::dbi::oracleace - Ace::Sequence::Homol |
31 ==============================================================================
32 ==============================================================================
33 | Distribution | Module used - Description | Min. ver. |
34 |---------------------------+--------------------------------------+-----------|
35 | Algorithm-Munkres | * Algorithm::Munkres - Solution to | None |
36 | | classical Assignment Problem | |
37 |==============================================================================|
38 | Used by: |
39 |------------------------------------------------------------------------------|
40 | * Bio::PhyloNetwork - Algorithm::Munkres |
41 ==============================================================================
42 ==============================================================================
43 | Distribution | Module used - Description | Min. ver. |
44 |---------------------------+--------------------------------------+-----------|
45 | Archive-Tar | * Archive::Tar - Read, write and | None |
46 | | manipulate tar files | |
47 |==============================================================================|
48 | Used by: |
49 |------------------------------------------------------------------------------|
50 | * Bio::Root::Build - Archive::Tar |
51 ==============================================================================
52 ==============================================================================
53 | Distribution | Module used - Description | Min. ver. |
54 |---------------------------+--------------------------------------+-----------|
55 | Array-Compare | * Array::Compare - Class to compare | None |
56 | | two arrays | |
57 |==============================================================================|
58 | Used by: |
59 |------------------------------------------------------------------------------|
60 | * Bio::PhyloNetwork - Array::Compare |
61 ==============================================================================
62 ==============================================================================
63 | Distribution | Module used - Description | Min. ver. |
64 |---------------------------+--------------------------------------+-----------|
65 | Bio-ASN1-EntrezGene | * Bio::ASN1::EntrezGene - Parser | None |
66 | | for NCBI Entrez Gene (ASN.1- | |
67 | | format) | |
68 |==============================================================================|
69 | Used by: |
70 |------------------------------------------------------------------------------|
71 | * Bio::SeqIO::entrezgene - Bio::ASN1::EntrezGene |
72 ==============================================================================
73 ==============================================================================
74 | Distribution | Module used - Description | Min. ver. |
75 |---------------------------+--------------------------------------+-----------|
76 | Compress-Zlib | * Compress::Zlib - Interface to | None |
77 | | zlib compression library | |
78 |==============================================================================|
79 | Used by: |
80 |------------------------------------------------------------------------------|
81 | * Bio::DB::SeqFeature::Store - Compress::Zlib |
82 ==============================================================================
83 ==============================================================================
84 | Distribution | Module used - Description | Min. ver. |
85 |---------------------------+--------------------------------------+-----------|
86 | Convert-Binary-C | * Convert::Binary::C - Binary Data | None |
87 | | Conversion using C Types | |
88 |==============================================================================|
89 | Used by: |
90 |------------------------------------------------------------------------------|
91 | * Bio::SeqIO::strider - Convert::Binary::C |
92 ==============================================================================
93 ==============================================================================
94 | Distribution | Module used - Description | Min. ver. |
95 |---------------------------+--------------------------------------+-----------|
96 | DBI | * DBI - Generic Database Interface | None |
97 | | (see DBD modules) | |
98 |==============================================================================|
99 | Used by: |
100 |------------------------------------------------------------------------------|
101 | * Bio::DB::GFF::Adaptor::dbi - DBI |
102 | * Bio::DB::GFF::Adaptor::dbi::caching_handle - DBI |
103 | * Bio::DB::SeqFeature::Store::DBI::mysql - DBI |
104 | * Bio::DB::SeqFeature::Store::DBI::Pg - DBI |
105 ==============================================================================
106 ==============================================================================
107 | Distribution | Module used - Description | Min. ver. |
108 |---------------------------+--------------------------------------+-----------|
109 | Data-Stag | * Data::Stag - NA | None |
110 | | * Data::Stag::XMLWriter - NA | |
111 |==============================================================================|
112 | Used by: |
113 |------------------------------------------------------------------------------|
114 | * Bio::Annotation::TagTree - Data::Stag |
115 | * Bio::SeqIO::chaosxml - Data::Stag::XMLWriter |
116 ==============================================================================
117 ==============================================================================
118 | Distribution | Module used - Description | Min. ver. |
119 |---------------------------+--------------------------------------+-----------|
120 | Graph | * Graph::Directed - NA | None |
121 |==============================================================================|
122 | Used by: |
123 |------------------------------------------------------------------------------|
124 | * Bio::PhyloNetwork - Graph::Directed |
125 | * Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph::Directed |
126 ==============================================================================
127 ==============================================================================
128 | Distribution | Module used - Description | Min. ver. |
129 |---------------------------+--------------------------------------+-----------|
130 | HTML-Parser | * HTML::HeadParser - Parse <HEAD> | None |
131 | | section of HTML documents | |
132 | | * HTML::Parser - Basic HTML Parser | |
133 |==============================================================================|
134 | Used by: |
135 |------------------------------------------------------------------------------|
136 | * Bio::Tools::Analysis::DNA::ESEfinder - HTML::HeadParser |
137 | * Bio::Tools::Analysis::Protein::ELM - HTML::HeadParser |
138 | * Bio::DB::GDB - HTML::Parser |
139 ==============================================================================
140 ==============================================================================
141 | Distribution | Module used - Description | Min. ver. |
142 |---------------------------+--------------------------------------+-----------|
143 | IO-String | * IO::String - IO::File interface | None |
144 | | for in-core strings | |
145 |==============================================================================|
146 | Used by: |
147 |------------------------------------------------------------------------------|
148 | * Bio::PhyloNetwork - IO::String |
149 | * Bio::DB::CUTG - IO::String |
150 | * Bio::DB::SeqHound - IO::String |
151 | * Bio::DB::WebDBSeqI - IO::String |
152 | * Bio::Index::Blast - IO::String |
153 | * Bio::Index::BlastTable - IO::String |
154 | * Bio::Index::Hmmer - IO::String |
155 | * Bio::SearchIO::Writer::BSMLResultWriter - IO::String |
156 | * Bio::SeqIO::game::gameWriter - IO::String |
157 | * Bio::Tools::Analysis::DNA::ESEfinder - IO::String |
158 | * Bio::Tools::Analysis::Protein::Domcut - IO::String |
159 | * Bio::Tools::Analysis::Protein::ELM - IO::String |
160 | * Bio::Tools::Analysis::Protein::GOR4 - IO::String |
161 | * Bio::Tools::Analysis::Protein::HNN - IO::String |
162 | * Bio::Tools::Analysis::Protein::Mitoprot - IO::String |
163 | * Bio::Tools::Analysis::Protein::NetPhos - IO::String |
164 | * Bio::Tools::Analysis::Protein::Scansite - IO::String |
165 | * Bio::Tools::Analysis::Protein::Sopma - IO::String |
166 | * Bio::Tools::Phylo::Molphy - IO::String |
167 | * Bio::Tools::Phylo::PAML - IO::String |
168 | * Bio::Tools::Run::RemoteBlast - IO::String |
169 | * Bio::TreeIO::cluster - IO::String |
170 | * Bio::TreeIO::nexus - IO::String |
171 | * Bio::Variation::IO::xml - IO::String |
172 ==============================================================================
173 ==============================================================================
174 | Distribution | Module used - Description | Min. ver. |
175 |---------------------------+--------------------------------------+-----------|
176 | Math-Random | * Math::Random - Random Number | None |
177 | | Generators | |
178 |==============================================================================|
179 | Used by: |
180 |------------------------------------------------------------------------------|
181 | * Bio::PhyloNetwork::RandomFactory - Math::Random |
182 ==============================================================================
183 ==============================================================================
184 | Distribution | Module used - Description | Min. ver. |
185 |---------------------------+--------------------------------------+-----------|
186 | Memoize | * Memoize - Automatically cache | None |
187 | | results of functions | |
188 |==============================================================================|
189 | Used by: |
190 |------------------------------------------------------------------------------|
191 | * Bio::DB::SeqFeature::Store::DBI::mysql - Memoize |
192 | * Bio::DB::SeqFeature::Store::DBI::Pg - Memoize |
193 ==============================================================================
194 ==============================================================================
195 | Distribution | Module used - Description | Min. ver. |
196 |---------------------------+--------------------------------------+-----------|
197 | Module-Build | * Module::Build - Build, test, and | 0.2805 |
198 | | install Perl modules | |
199 | | * Module::Build::PPMMaker - NA | |
200 |==============================================================================|
201 | Used by: |
202 |------------------------------------------------------------------------------|
203 | * Bio::Root::Build - Module::Build |
204 | * Bio::Root::Test - Module::Build |
205 | * Bio::Root::Build - Module::Build::PPMMaker |
206 ==============================================================================
207 ==============================================================================
208 | Distribution | Module used - Description | Min. ver. |
209 |---------------------------+--------------------------------------+-----------|
210 | PostScript | * PostScript::TextBlock - Objects | None |
211 | | used by PS::Document | |
212 |==============================================================================|
213 | Used by: |
214 |------------------------------------------------------------------------------|
215 | * Bio::Tree::Draw::Cladogram - PostScript::TextBlock |
216 ==============================================================================
217 ==============================================================================
218 | Distribution | Module used - Description | Min. ver. |
219 |---------------------------+--------------------------------------+-----------|
220 | SVG-Graph | * SVG::Graph - Series of Modules to | None |
221 | | produce SVG graphs | |
222 | | * SVG::Graph::Data - NA | |
223 | | * SVG::Graph::Data::Node - NA | |
224 | | * SVG::Graph::Data::Tree - NA | |
225 |==============================================================================|
226 | Used by: |
227 |------------------------------------------------------------------------------|
228 | * Bio::TreeIO::svggraph - SVG::Graph |
229 | * Bio::TreeIO::svggraph - SVG::Graph::Data |
230 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Node |
231 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Tree |
232 ==============================================================================
233 ==============================================================================
234 | Distribution | Module used - Description | Min. ver. |
235 |---------------------------+--------------------------------------+-----------|
236 | Set-Scalar | * Set::Scalar - Set of scalars (inc | None |
237 | | references) | |
238 |==============================================================================|
239 | Used by: |
240 |------------------------------------------------------------------------------|
241 | * Bio::Tree::Compatible - Set::Scalar |
242 ==============================================================================
243 ==============================================================================
244 | Distribution | Module used - Description | Min. ver. |
245 |---------------------------+--------------------------------------+-----------|
246 | Spreadsheet-ParseExcel | * Spreadsheet::ParseExcel - Get | None |
247 | | information from Excel file | |
248 |==============================================================================|
249 | Used by: |
250 |------------------------------------------------------------------------------|
251 | * Bio::SeqIO::excel - Spreadsheet::ParseExcel |
252 ==============================================================================
253 ==============================================================================
254 | Distribution | Module used - Description | Min. ver. |
255 |---------------------------+--------------------------------------+-----------|
256 | Storable | * Storable - Persistent data | None |
257 | | structure mechanism | |
258 |==============================================================================|
259 | Used by: |
260 |------------------------------------------------------------------------------|
261 | * Bio::DB::SeqFeature::Store - Storable |
262 | * Bio::Restriction::Enzyme - Storable |
263 ==============================================================================
264 ==============================================================================
265 | Distribution | Module used - Description | Min. ver. |
266 |---------------------------+--------------------------------------+-----------|
267 | Test-Exception | * Test::Exception - Functions for | None |
268 | | testing exception-based code | |
269 |==============================================================================|
270 | Used by: |
271 |------------------------------------------------------------------------------|
272 | * Bio::Root::Test - Test::Exception |
273 ==============================================================================
274 ==============================================================================
275 | Distribution | Module used - Description | Min. ver. |
276 |---------------------------+--------------------------------------+-----------|
277 | Test-Simple | * Test::Builder - NA | None |
278 | | * Test::More - More functions for | |
279 | | writing tests | |
280 |==============================================================================|
281 | Used by: |
282 |------------------------------------------------------------------------------|
283 | * Bio::Root::Test::Warn - Test::Builder |
284 | * Bio::Root::Test - Test::More |
285 ==============================================================================
286 ==============================================================================
287 | Distribution | Module used - Description | Min. ver. |
288 |---------------------------+--------------------------------------+-----------|
289 | Test-Warn | * Test::Warn - NA | None |
290 |==============================================================================|
291 | Used by: |
292 |------------------------------------------------------------------------------|
293 | * Bio::Root::Test - Test::Warn |
294 | * Bio::Root::Test::Warn - Test::Warn |
295 ==============================================================================
296 ==============================================================================
297 | Distribution | Module used - Description | Min. ver. |
298 |---------------------------+--------------------------------------+-----------|
299 | Tie-Cacher | * Tie::Cacher - NA | None |
300 |==============================================================================|
301 | Used by: |
302 |------------------------------------------------------------------------------|
303 | * Bio::DB::SeqFeature::Store - Tie::Cacher |
304 ==============================================================================
305 ==============================================================================
306 | Distribution | Module used - Description | Min. ver. |
307 |---------------------------+--------------------------------------+-----------|
308 | Time-HiRes | * Time::HiRes - High resolution | None |
309 | | time, sleep, and alarm | |
310 |==============================================================================|
311 | Used by: |
312 |------------------------------------------------------------------------------|
313 | * Bio::DB::SeqFeature::Store::Loader - Time::HiRes |
314 | * Bio::DB::SeqFeature::Store::DBI::mysql - Time::HiRes |
315 | * Bio::DB::SeqFeature::Store::DBI::Pg - Time::HiRes |
316 ==============================================================================
317 ==============================================================================
318 | Distribution | Module used - Description | Min. ver. |
319 |---------------------------+--------------------------------------+-----------|
320 | Tree-DAG_Node | * Tree::DAG_Node - base class for | None |
321 | | trees | |
322 |==============================================================================|
323 | Used by: |
324 |------------------------------------------------------------------------------|
325 | * Bio::TreeIO::svggraph - Tree::DAG_Node |
326 ==============================================================================
327 ==============================================================================
328 | Distribution | Module used - Description | Min. ver. |
329 |---------------------------+--------------------------------------+-----------|
330 | URI | * URI - NA | None |
331 | | * URI::Escape - General URI | |
332 | | escaping/unescaping functions | |
333 |==============================================================================|
334 | Used by: |
335 |------------------------------------------------------------------------------|
336 | * Bio::DB::NCBIHelper - URI |
337 | * Bio::DB::Query::WebQuery - URI |
338 | * Bio::Tools::EUtilities::EUtilParameters - URI |
339 | * Bio::DB::CUTG - URI::Escape |
340 | * Bio::DB::Biblio::eutils - URI::Escape |
341 | * Bio::FeatureIO::gff - URI::Escape |
342 | * Bio::FeatureIO::interpro - URI::Escape |
343 | * Bio::SeqFeature::Annotated - URI::Escape |
344 ==============================================================================
345 ==============================================================================
346 | Distribution | Module used - Description | Min. ver. |
347 |---------------------------+--------------------------------------+-----------|
348 | WWW-Mechanize | * WWW::Mechanize - Automates web | None |
349 | | page form & link interaction | |
350 |==============================================================================|
351 | Used by: |
352 |------------------------------------------------------------------------------|
353 | * Bio::DB::MeSH - WWW::Mechanize |
354 ==============================================================================
355 ==============================================================================
356 | Distribution | Module used - Description | Min. ver. |
357 |---------------------------+--------------------------------------+-----------|
358 | Win32 | * Win32 - NA | None |
359 |==============================================================================|
360 | Used by: |
361 |------------------------------------------------------------------------------|
362 | * Bio::DB::Fasta - Win32 |
363 | * Bio::DB::GFF - Win32 |
364 | * Bio::DB::Qual - Win32 |
365 | * Bio::Root::IO - Win32 |
366 ==============================================================================
367 ==============================================================================
368 | Distribution | Module used - Description | Min. ver. |
369 |---------------------------+--------------------------------------+-----------|
370 | XML-DOM | * XML::DOM - Implements Level 1 of | None |
371 | | W3's DOM | |
372 |==============================================================================|
373 | Used by: |
374 |------------------------------------------------------------------------------|
375 | * Bio::FeatureIO::interpro - XML::DOM |
376 | * Bio::SeqIO::bsml - XML::DOM |
377 | * Bio::SeqIO::interpro - XML::DOM |
378 ==============================================================================
379 ==============================================================================
380 | Distribution | Module used - Description | Min. ver. |
381 |---------------------------+--------------------------------------+-----------|
382 | XML-DOM-XPath | * XML::DOM::XPath - NA | None |
383 |==============================================================================|
384 | Used by: |
385 |------------------------------------------------------------------------------|
386 | * Bio::FeatureIO::interpro - XML::DOM::XPath |
387 | * Bio::SeqIO::interpro - XML::DOM::XPath |
388 ==============================================================================
389 ==============================================================================
390 | Distribution | Module used - Description | Min. ver. |
391 |---------------------------+--------------------------------------+-----------|
392 | XML-LibXML | * XML::LibXML - Interface to the | None |
393 | | libxml library | |
394 | | * XML::LibXML::Reader - NA | |
395 |==============================================================================|
396 | Used by: |
397 |------------------------------------------------------------------------------|
398 | * Bio::TreeIO::phyloxml - XML::LibXML |
399 | * Bio::TreeIO::phyloxml - XML::LibXML::Reader |
400 ==============================================================================
401 ==============================================================================
402 | Distribution | Module used - Description | Min. ver. |
403 |---------------------------+--------------------------------------+-----------|
404 | XML-Parser | * XML::Parser - Flexible fast | None |
405 | | parser with plug-in styles | |
406 |==============================================================================|
407 | Used by: |
408 |------------------------------------------------------------------------------|
409 | * Bio::Biblio::IO::medlinexml - XML::Parser |
410 ==============================================================================
411 ==============================================================================
412 | Distribution | Module used - Description | Min. ver. |
413 |---------------------------+--------------------------------------+-----------|
414 | XML-SAX | * XML::SAX - NA | None |
415 |==============================================================================|
416 | Used by: |
417 |------------------------------------------------------------------------------|
418 | * Bio::ClusterIO::dbsnp - XML::SAX |
419 | * Bio::SearchIO::blastxml - XML::SAX |
420 | * Bio::SeqIO::bsml_sax - XML::SAX |
421 | * Bio::SeqIO::tigrxml - XML::SAX |
422 ==============================================================================
423 ==============================================================================
424 | Distribution | Module used - Description | Min. ver. |
425 |---------------------------+--------------------------------------+-----------|
426 | XML-SAX-Writer | * XML::SAX::Writer - NA | None |
427 |==============================================================================|
428 | Used by: |
429 |------------------------------------------------------------------------------|
430 | * Bio::SeqIO::tigrxml - XML::SAX::Writer |
431 ==============================================================================
432 ==============================================================================
433 | Distribution | Module used - Description | Min. ver. |
434 |---------------------------+--------------------------------------+-----------|
435 | XML-Simple | * XML::Simple - Easy API to | None |
436 | | maintain XML (esp config files) | |
437 |==============================================================================|
438 | Used by: |
439 |------------------------------------------------------------------------------|
440 | * Bio::DB::HIV::HIVQueryHelper - XML::Simple |
441 | * Bio::DB::Query::HIVQuery - XML::Simple |
442 | * Bio::Tools::EUtilities - XML::Simple |
443 ==============================================================================
444 ==============================================================================
445 | Distribution | Module used - Description | Min. ver. |
446 |---------------------------+--------------------------------------+-----------|
447 | XML-Twig | * XML::Twig - A module for easy | None |
448 | | processing of XML | |
449 |==============================================================================|
450 | Used by: |
451 |------------------------------------------------------------------------------|
452 | * Bio::DB::Biblio::eutils - XML::Twig |
453 | * Bio::DB::Taxonomy::entrez - XML::Twig |
454 | * Bio::Variation::IO::xml - XML::Twig |
455 ==============================================================================
456 ==============================================================================
457 | Distribution | Module used - Description | Min. ver. |
458 |---------------------------+--------------------------------------+-----------|
459 | XML-Writer | * XML::Writer - Module for writing | 0.4 |
460 | | XML documents | |
461 |==============================================================================|
462 | Used by: |
463 |------------------------------------------------------------------------------|
464 | * Bio::SearchIO::Writer::BSMLResultWriter - XML::Writer |
465 | * Bio::SeqIO::agave - XML::Writer |
466 | * Bio::SeqIO::chadoxml - XML::Writer |
467 | * Bio::SeqIO::tinyseq - XML::Writer |
468 | * Bio::SeqIO::game::gameWriter - XML::Writer |
469 | * Bio::Variation::IO::xml - XML::Writer |
470 ==============================================================================
471 ==============================================================================
472 | Distribution | Module used - Description | Min. ver. |
473 |---------------------------+--------------------------------------+-----------|
474 | bioperl-ext | * Bio::Ext::Align - NA | None |
475 | | * Bio::SeqIO::staden::read - NA | |
476 |==============================================================================|
477 | Used by: |
478 |------------------------------------------------------------------------------|
479 | * Bio::SearchDist - Bio::Ext::Align |
480 | * Bio::Tools::AlignFactory - Bio::Ext::Align |
481 | * Bio::Tools::dpAlign - Bio::Ext::Align |
482 | * Bio::Tools::pSW - Bio::Ext::Align |
483 | * Bio::SeqIO::abi - Bio::SeqIO::staden::read |
484 | * Bio::SeqIO::alf - Bio::SeqIO::staden::read |
485 | * Bio::SeqIO::ctf - Bio::SeqIO::staden::read |
486 | * Bio::SeqIO::exp - Bio::SeqIO::staden::read |
487 | * Bio::SeqIO::pln - Bio::SeqIO::staden::read |
488 | * Bio::SeqIO::ztr - Bio::SeqIO::staden::read |
489 ==============================================================================
490 ==============================================================================
491 | Distribution | Module used - Description | Min. ver. |
492 |---------------------------+--------------------------------------+-----------|
493 | libwww-perl | * HTTP::Request - Class | 5.64 |
494 | | encapsulating HTTP Requests | |
495 | | * HTTP::Request::Common - Functions | |
496 | | that generate HTTP::Requests | |
497 | | * HTTP::Response - Class | |
498 | | encapsulating HTTP Responses | |
499 | | * LWP - Libwww-perl | |
500 | | * LWP::Simple - Simple procedural | |
501 | | interface to libwww-perl | |
502 | | * LWP::UserAgent - A WWW UserAgent | |
503 | | class | |
504 |==============================================================================|
505 | Used by: |
506 |------------------------------------------------------------------------------|
507 | * Bio::Tools::EUtilities::EUtilParameters - HTTP::Request |
508 | * Bio::DB::DBFetch - HTTP::Request::Common |
509 | * Bio::DB::GDB - HTTP::Request::Common |
510 | * Bio::DB::HIV - HTTP::Request::Common |
511 | * Bio::DB::NCBIHelper - HTTP::Request::Common |
512 | * Bio::DB::SwissProt - HTTP::Request::Common |
513 | * Bio::DB::WebDBSeqI - HTTP::Request::Common |
514 | * Bio::DB::Query::WebQuery - HTTP::Request::Common |
515 | * Bio::Tools::Run::RemoteBlast - HTTP::Request::Common |
516 | * Bio::DB::WebDBSeqI - HTTP::Response |
517 | * Bio::Tools::Protparam - LWP |
518 | * Bio::Tools::Run::RemoteBlast - LWP |
519 | * Bio::DB::Biblio::eutils - LWP::Simple |
520 | * Bio::Root::IO - LWP::Simple |
521 | * Bio::DB::GDB - LWP::UserAgent |
522 | * Bio::DB::GenericWebAgent - LWP::UserAgent |
523 | * Bio::DB::MeSH - LWP::UserAgent |
524 | * Bio::DB::WebDBSeqI - LWP::UserAgent |
525 | * Bio::DB::Query::WebQuery - LWP::UserAgent |
526 | * Bio::Root::Build - LWP::UserAgent |
527 ==============================================================================
528 ==============================================================================
529 | Distribution | Module used - Description | Min. ver. |
530 |---------------------------+--------------------------------------+-----------|
531 | libxml-perl | * XML::Parser::PerlSAX - NA | None |
532 |==============================================================================|
533 | Used by: |
534 |------------------------------------------------------------------------------|
535 | * Bio::OntologyIO::InterProParser - XML::Parser::PerlSAX |
536 | * Bio::SeqIO::tinyseq - XML::Parser::PerlSAX |
537 | * Bio::SeqIO::game::gameSubs - XML::Parser::PerlSAX |
538 ==============================================================================
539 ==============================================================================
540 | Distribution | Module used - Description | Min. ver. |
541 |---------------------------+--------------------------------------+-----------|
542 | mod_perl | * Apache2::SubProcess - NA | None |
543 |==============================================================================|
544 | Used by: |
545 |------------------------------------------------------------------------------|
546 | * Bio::DB::WebDBSeqI - Apache2::SubProcess |
547 ==============================================================================