9 env: PERL_CPANM_OPT="--notest --force --skip-satisfied"
11 #This should solve problem installing Perl's DB_File & GraphViz
12 - "sudo apt-get install libdb-dev graphviz libgd2-xpm-dev libxml2-dev 2>&1 | tail -n 4"
13 #These are recommended or required Perl libraries:
14 - "cpanm GD 2>&1 | tail -n 1"
15 - "cpanm HTML::TableExtract DBI Data::Stag DB_File 2>&1 | tail -n 1"
16 - "cpanm DBD::mysql DBD::Pg DBD::SQLite 2>&1 | tail -n 1"
17 - "cpanm Algorithm::Munkres Array::Compare Convert::Binary::C Error 2>&1 | tail -n 1"
18 - "cpanm Graph SVG SVG::Graph GraphViz 2>&1 | tail -n 1"
19 - "cpanm XML::DOM::XPath XML::Parser XML::Parser::PerlSAX 2>&1 | tail -n 1"
20 - "cpanm XML::SAX XML::SAX::Writer XML::Simple XML::LibXML XML::Twig XML::Writer 2>&1 | tail -n 1"
21 - "cpanm PostScript::TextBlock Set::Scalar Sort::Naturally YAML | tail -n 1"
22 - "cpanm Math::Random SOAP::Lite Spreadsheet::ParseExcel | tail -n 1"
23 - "cpanm Bio::Phylo | tail -n 1"
24 - "cpanm -f -n Bio::ASN1::EntrezGene | tail -n 1"
25 - "git clone https://github.com/bioperl/Bio-Root.git; export PERL5LIB=$( pwd )/Bio-Root/lib:$PERL5LIB"
26 #This installs BioPerl itself:
27 - "perl ./Build.PL --accept"
32 #TODO - send emails to bioperl-guts-l