fixed index bugs, and fixed makefile
[bioperl-live.git] / MANIFEST
blob45ae26b3f78b4a3fb69e6f345f35a4e6082d436e
1 # Bioperl Manifest List
2 # $Id: MANIFEST,v 1.12.6.1 1999-09-19 16:13:44 birney Exp $
4 MANIFEST
5 Makefile.PL
6 README
7 Changes
8 PLATFORMS
9 bioperl.pod
10 Bio/Parse.pm
11 Bio/Root/Err.pm
12 Bio/Root/Global.pm
13 Bio/Root/IOManager.pm
14 Bio/Root/Object.pm
15 Bio/Root/Utilities.pm
16 Bio/Root/Vector.pm
17 Bio/Root/Xref.pm
18 Bio/Seq.pm
19 Bio/SearchDist.pm
20 Bio/SimpleAlign.pm
21 Bio/Tools/AlignFactory.pm
22 Bio/Tools/Blast.pm
23 Bio/Tools/Blast/HSP.pm
24 Bio/Tools/Blast/HTML.pm
25 Bio/Tools/Blast/Run/LocalBlast.pm
26 Bio/Tools/Blast/Run/Makefile.PL
27 Bio/Tools/Blast/Run/Webblast.pm
28 Bio/Tools/Blast/Run/postclient.pl
29 Bio/Tools/Blast/Sbjct.pm
30 Bio/Tools/Fasta.pm
31 Bio/Tools/SeqAnal.pm
32 Bio/Tools/WWW.pm
33 Bio/Tools/pSW.pm
34 Bio/Tools/Sigcleave.pm
35 Bio/Tools/RestrictionEnzyme.pm
36 Bio/Index/Abstract.pm
37 Bio/Index/Fasta.pm
38 Bio/Index/EMBL.pm
39 Bio/Index/SwissPfam.pm
40 Bio/DB/BioSeqI.pm
41 Bio/DB/GenBank.pm
42 Bio/DB/GenPept.pm
43 Bio/SeqIO.pm
44 Bio/SeqIO/Handler.pm
45 Bio/SeqIO/EMBL.pm
46 Bio/SeqIO/Fasta.pm
47 Bio/SeqIO/Raw.pm
48 Bio/SeqIO/GCG.pm
49 t/Seq.t
50 t/SimpleAlign.t
51 t/Blast.t              
52 t/HTML.t               
53 t/Seq.t                
54 t/WWW.t
55 t/Fasta.t              
56 t/RestrictionEnzyme.t
57 t/Sigcleave.t  
58 t/SeqAnal.t
59 t/HSP.t                
60 t/Sbjct.t              
61 t/SimpleAlign.t
62 t/SeqIO.t
63 t/DB.t
64 t/Index.t
65 t/test.fasta
66 t/test.raw
67 t/test.gcg
68 t/test.pfam
69 t/swisspfam.data
70 scripts/bpindex.pl
71 scripts/bpfetch.pl
72 examples/restriction.pl
73 examples/rev_and_trans.pl
74 examples/root_object/Bar.pm
75 examples/root_object/Foo.pm
76 examples/root_object/Outer.pm
77 examples/root_object/error.out
78 examples/root_object/error.pl
79 examples/root_object/filehandle.out
80 examples/root_object/filehandle.pl
81 examples/root_object/read.pl
82 examples/root_object/read.test
83 examples/root_object/read.test2
84 examples/root_object/read.test3