Bio/FeatureIO/gtf.pm

   1 # $Id$
   2 #
   3 # BioPerl module for Bio::FeatureIO::gtf
   4 #
   5 # Cared for by Allen Day <allenday@ucla.edu>
   6 #
   7 # Copyright Allen Day
   8 #
   9 # You may distribute this module under the same terms as perl itself
  10
  11 # POD documentation - main docs before the code
  12
  13 =head1 NAME
  14
  15 Bio::FeatureIO::gtf - read write features in GTF format
  16
  17 =head1 SYNOPSIS
  18
  19 L<Bio::FeatureIO::gff>
  20
  21 =head1 DESCRIPTION
  22
  23 GTF, is also known as GFF v2.5.  This class is simply a subclass
  24 of Bio::FeatureIO::gff that initializes with -version =E<gt> 2.5.
  25
  26 =head1 FEEDBACK
  27
  28 =head2 Mailing Lists
  29
  30 User feedback is an integral part of the evolution of this and other
  31 Bioperl modules. Send your comments and suggestions preferably to
  32 the Bioperl mailing list.  Your participation is much appreciated.
  33
  34   bioperl-l@bioperl.org                  - General discussion
  35   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
  36
  37 =head2 Reporting Bugs
  38
  39 Report bugs to the Bioperl bug tracking system to help us keep track
  40 of the bugs and their resolution. Bug reports can be submitted via
  41 the web:
  42
  43   http://bugzilla.open-bio.org/
  44
  45 =head1 AUTHOR - Allen Day
  46
  47 Email allenday@ucla.edu
  48
  49 =head1 APPENDIX
  50
  51 The rest of the documentation details each of the object methods.
  52 Internal methods are usually preceded with a _
  53
  54 =cut
  55
  56
  57 # Let the code begin...
  58
  59
  60 package Bio::FeatureIO::gtf;
  61 use base qw(Bio::FeatureIO::gff);
  62 use strict;
  63
  64 # Object preamble - inherits from Bio::Root::Root
  65
  66 sub _initialize {
  67   my($self,%arg) = @_;
  68   $arg{-version} = 2.5;
  69   $self->SUPER::_initialize(%arg);
  70   return 1;
  71 }
  72
  73 1;