MANIFEST

   1 # Bioperl Manifest List
   2 # $Id: MANIFEST,v 1.8 1999-02-21 21:36:33 dag Exp $
   3 #
   4 MANIFEST
   5 Makefile.PL
   6 README
   7 Changes
   8 PLATFORMS
   9 bioperl.pod
  10 Bio/Parse.pm
  11 Bio/Root/Err.pm
  12 Bio/Root/Global.pm
  13 Bio/Root/IOManager.pm
  14 Bio/Root/Object.pm
  15 Bio/Root/Utilities.pm
  16 Bio/Root/Vector.pm
  17 Bio/Root/Xref.pm
  18 Bio/Seq.pm
  19 Bio/SearchDist.pm
  20 Bio/SimpleAlign.pm
  21 Bio/Tools/AlignFactory.pm
  22 Bio/Tools/Blast.pm
  23 Bio/Tools/Blast/HSP.pm
  24 Bio/Tools/Blast/HTML.pm
  25 Bio/Tools/Blast/Run/LocalBlast.pm
  26 Bio/Tools/Blast/Run/Makefile.PL
  27 Bio/Tools/Blast/Run/Webblast.pm
  28 Bio/Tools/Blast/Run/postclient.pl
  29 Bio/Tools/Blast/Sbjct.pm
  30 Bio/Tools/Fasta.pm
  31 Bio/Tools/SeqAnal.pm
  32 Bio/Tools/WWW.pm
  33 Bio/Tools/pSW.pm
  34 Bio/Tools/Sigcleave.pm
  35 Bio/Tools/RestrictionEnzyme.pm
  36 Bio/DB/Abstract.pm
  37 Bio/SeqIO.pm
  38 Bio/SeqIO/Handler.pm
  39 Bio/SeqIO/EMBL.pm
  40 Bio/SeqIO/Fasta.pm
  41 Bio/SeqIO/Raw.pm
  42 Bio/SeqIO/GCG.pm
  43 t/Seq.t
  44 t/SimpleAlign.t
  45 t/Blast.t
  46 t/HTML.t
  47 t/Seq.t
  48 t/WWW.t
  49 t/Fasta.t
  50 t/RestrictionEnzyme.t
  51 t/Sigcleave.t
  52 t/SeqAnal.t
  53 t/HSP.t
  54 t/Sbjct.t
  55 t/SimpleAlign.t
  56 t/SeqIO.t
  57 t/test.fasta
  58 t/test.raw
  59 t/test.gcg
  60 examples/restriction.pl
  61 examples/rev_and_trans.pl
  62 examples/root_object/Bar.pm
  63 examples/root_object/Foo.pm
  64 examples/root_object/Outer.pm
  65 examples/root_object/error.out
  66 examples/root_object/error.pl
  67 examples/root_object/filehandle.out
  68 examples/root_object/filehandle.pl
  69 examples/root_object/read.pl
  70 examples/root_object/read.test
  71 examples/root_object/read.test2
  72 examples/root_object/read.test3
  73 Compile/SW/Makefile.PL
  74 Compile/SW/bp_sw.pm
  75 Compile/SW/bp_sw.xs
  76 Compile/SW/libs/aln.c
  77 Compile/SW/libs/aln.h
  78 Compile/SW/libs/alnconvert.c
  79 Compile/SW/libs/alnconvert.h
  80 Compile/SW/libs/alnrange.c
  81 Compile/SW/libs/alnrange.h
  82 Compile/SW/libs/asciibtcanvas.c
  83 Compile/SW/libs/asciibtcanvas.h
  84 Compile/SW/libs/basematrix.c
  85 Compile/SW/libs/basematrix.h
  86 Compile/SW/libs/btcanvas.c
  87 Compile/SW/libs/btcanvas.h
  88 Compile/SW/libs/cdna.c
  89 Compile/SW/libs/cdna.h
  90 Compile/SW/libs/cdnadb.c
  91 Compile/SW/libs/cdnadb.h
  92 Compile/SW/libs/codon.c
  93 Compile/SW/libs/codon.h
  94 Compile/SW/libs/codonmapper.c
  95 Compile/SW/libs/codonmapper.h
  96 Compile/SW/libs/codonmatrix.c
  97 Compile/SW/libs/codonmatrix.h
  98 Compile/SW/libs/commandline.c
  99 Compile/SW/libs/commandline.h
 100 Compile/SW/libs/complexconsensi.c
 101 Compile/SW/libs/complexconsensi.h
 102 Compile/SW/libs/complexevalset.c
 103 Compile/SW/libs/complexevalset.h
 104 Compile/SW/libs/complexsequence.c
 105 Compile/SW/libs/complexsequence.h
 106 Compile/SW/libs/compmat.c
 107 Compile/SW/libs/compmat.h
 108 Compile/SW/libs/database.h
 109 Compile/SW/libs/dna.c
 110 Compile/SW/libs/dna.h
 111 Compile/SW/libs/dnamatrix.c
 112 Compile/SW/libs/dnamatrix.h
 113 Compile/SW/libs/dpenvelope.c
 114 Compile/SW/libs/dpenvelope.h
 115 Compile/SW/libs/dyna.h
 116 Compile/SW/libs/dynlibcross.c
 117 Compile/SW/libs/dynlibcross.h
 118 Compile/SW/libs/embl.c
 119 Compile/SW/libs/embl.h
 120 Compile/SW/libs/gene.c
 121 Compile/SW/libs/gene.h
 122 Compile/SW/libs/genomic.c
 123 Compile/SW/libs/genomic.h
 124 Compile/SW/libs/genomicdb.c
 125 Compile/SW/libs/genomicdb.h
 126 Compile/SW/libs/genomicregion.c
 127 Compile/SW/libs/genomicregion.h
 128 Compile/SW/libs/histogram.c
 129 Compile/SW/libs/histogram.h
 130 Compile/SW/libs/hscore.c
 131 Compile/SW/libs/hscore.h
 132 Compile/SW/libs/linesubs.c
 133 Compile/SW/libs/linesubs.h
 134 Compile/SW/libs/makefile
 135 Compile/SW/libs/packaln.c
 136 Compile/SW/libs/packaln.h
 137 Compile/SW/libs/probability.c
 138 Compile/SW/libs/probability.h
 139 Compile/SW/libs/protein.c
 140 Compile/SW/libs/protein.h
 141 Compile/SW/libs/proteindb.c
 142 Compile/SW/libs/proteindb.h
 143 Compile/SW/libs/proteinsw.c
 144 Compile/SW/libs/proteinsw.h
 145 Compile/SW/libs/seqaligndisplay.c
 146 Compile/SW/libs/seqaligndisplay.h
 147 Compile/SW/libs/sequence.c
 148 Compile/SW/libs/sequence.h
 149 Compile/SW/libs/sequencedb.c
 150 Compile/SW/libs/sequencedb.h
 151 Compile/SW/libs/sw.h
 152 Compile/SW/libs/sw_wrap.c
 153 Compile/SW/libs/sw_wrap.h
 154 Compile/SW/libs/transcript.c
 155 Compile/SW/libs/transcript.h
 156 Compile/SW/libs/translation.c
 157 Compile/SW/libs/translation.h
 158 Compile/SW/libs/wisebase.h
 159 Compile/SW/libs/wiseconfig.c
 160 Compile/SW/libs/wiseconfig.h
 161 Compile/SW/libs/wiseerror.c
 162 Compile/SW/libs/wiseerror.h
 163 Compile/SW/libs/wisefile.c
 164 Compile/SW/libs/wisefile.h
 165 Compile/SW/libs/wisememman.c
 166 Compile/SW/libs/wisememman.h
 167 Compile/SW/libs/wiseoverlay.c
 168 Compile/SW/libs/wiseoverlay.h
 169 Compile/SW/libs/wiserandom.c
 170 Compile/SW/libs/wiserandom.h
 171 Compile/SW/libs/wisestring.c
 172 Compile/SW/libs/wisestring.h
 173 Compile/SW/libs/wisetime.c
 174 Compile/SW/libs/wisetime.h
 175 Compile/SW/test.pl
 176 Compile/SW/typemap
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