Build.PL

   1 #!/usr/bin/perl -w
   2
   3 # This is a Module::Build script for bioperl-db installation.
   4 # See http://search.cpan.org/~kwilliams/Module-Build/lib/Module/Build.pm
   5
   6 # Uses a custom subclass of Module::Build called Bio::Root::Build
   7
   8 use strict;
   9 use Bio::Root::Build;
  10
  11 # Set up the Bio::Root::Build object
  12 my $build = Bio::Root::Build->new(
  13     module_name         => 'Bio',
  14     dist_name           => 'BioPerl-db',
  15     dist_version        => '1.007000',
  16     dist_author         => 'BioPerl Team <bioperl-l@bioperl.org>',
  17     dist_abstract       => 'BioPerl-db - package for biological databases',
  18     license             => 'perl',
  19     requires            => {
  20                             'perl'                      => '5.6.1',
  21                             'Bio::Root::Version'        => '1.7.0',
  22                             'DBI'                       => 0
  23                            },
  24     dynamic_config      => 1,
  25     create_makefile_pl  => 'passthrough'
  26
  27     #pm_files           => {} # modules in Bio are treated as if they were in lib and auto-installed
  28     #script_files       => [] # scripts in scripts directory are installed on-demand
  29 );
  30
  31 # Ask questions
  32 biosql_conf();
  33 $build->choose_scripts;
  34
  35 # Add extra things to MANIFEST.SKIP
  36 $build->add_to_manifest_skip('t/DBHarness.biosql.conf');
  37
  38 # Create the build script and exit
  39 $build->create_build_script;
  40
  41 exit;
  42
  43
  44 # setup t/DBHarness.biosql.conf
  45 sub biosql_conf {
  46     $build->y_n("Have you already installed BioSQL? y/n", 'n') || die "\nBioSQL must be installed prior to installation of bioperl-db; see the INSTALL file\n";
  47
  48     my $config_file = File::Spec->catfile('t', 'DBHarness.biosql.conf');
  49     if (-e $config_file) {
  50         $build->y_n("Do you want to use the existing '$config_file' config file? y/n", 'y') && return;
  51         unlink($config_file);
  52     }
  53
  54     open(my $out, ">", $config_file) or die "Error: could not write to config file '$config_file'\n";
  55
  56     my %config = (driver     => 'mysql',
  57                   host       => '127.0.0.1',
  58                   user       => 'root',
  59                   port       => 3306,
  60                   password   => '',
  61                   dbname     => 'bioseqdb',
  62                   database   => 'biosql',
  63                   schema_sql => '../biosql-schema/sql/biosqldb-mysql.sql');
  64
  65     $config{driver} = $build->prompt("DBD driver to use (mandatory)?", $config{driver});
  66     $config{host} = $build->prompt("Machine to connect to (mandatory)?", $config{host});
  67     $config{user} = $build->prompt("User to connect to server as (mandatory)?", $config{user});
  68
  69     $config{port} = $build->prompt("Port the server is running on (optional, '' for none)?", $config{port});
  70     $config{port} = '' if $config{port} eq "''";
  71
  72     $config{password} = $build->prompt("Password (optional)?", $config{password} || 'undef');
  73     $config{password} = '' if $config{password} eq 'undef';
  74
  75     $build->log_info("
  76     # The next answer will be used to identify the database name in
  77     # the connect string, e.g., using database=, dbname=, or sid=,
  78     # depending on the driver.
  79     # If this is not set the test scripts will build a temporary
  80     # database from scratch at the beginning and destroy it at the
  81     # end. Conversely, if you do set it then the database must exist,
  82     # or else the tests will fail.
  83     # Generally, it is preferred to pre-build the database, simply for
  84     # efficiency reasons, and it will also enable debugging your
  85     # schema content if some test acts up.
  86     \n");
  87     $config{dbname} = $build->prompt("Name of your existing Biosql database, as it is known to your RDBMS (optional, '' for none)?", $config{dbname});
  88     $config{dbname} = '' if $config{dbname} eq "''";
  89
  90     unless ($config{dbname}) {
  91         $config{schema_sql} = $build->prompt("Set schema_sql to use the version appropriate for your RDBMS (mandatory)", $config{schema_sql});
  92     }
  93     $config{schema_sql} = "['$config{schema_sql}']"; # don't know why it is stored as an array ref, is this correct?
  94
  95     $build->log_info("
  96     # The next answer does not refer to the schema or RDBMS; it only
  97     # identifies which of the databases supported in bioperl-db you
  98     # want to be using. Since at present bioperl-db only supports biosql,
  99     # this must be biosql.
 100     \n");
 101     $config{database} = $build->prompt("The name of the database within bioperl-db?", $config{database});
 102
 103     print $out "{\n";
 104     while (my ($key, $val) = each %config) {
 105         $val = "'$val'" unless $key eq 'schema_sql';
 106         print $out "\t'$key' => $val,\n";
 107     }
 108     print $out "}\n";
 109     close($out);
 110
 111     # we deliberately don't add the config file to cleanup, but it shouldn't
 112     # cause problems because it is in MANIFEST.SKIP
 113 }