ucsc-compiler.lisp

   1 (in-package :bioinfo)
   2
   3 (defparameter *ucsc-dir*
   4   (merge-pathnames  #p"lbhc/ucsc/db/" (user-homedir-pathname)))
   5
   6 (defparameter *gen-target*   (merge-pathnames *system-path* #p"ucsc-gen.lisp"))
   7
   8 (defun ucsc-map-sql (fn)
   9   (cl-fad:walk-directory *ucsc-dir* fn
  10                          :test #'(lambda (x)
  11                                    (equal (pathname-type x) "sql"))))
  12
  13 ;; Generate CLSQL classes for sql files of UCSC
  14 (defun compile-ucsc-sql ()
  15   (redirect *gen-target*
  16     (write '(in-package :bioinfo))
  17     (terpri)
  18     (ucsc-map-sql #'(lambda (x)
  19                       (format t ";; Generated from ~a~%" (namestring x))
  20                       (write (compile-sql x))
  21                       (terpri))))
  22   (compile-file *gen-target*))
  23
  24 (defun compile-and-load-ucsc ()
  25   (compile-ucsc-sql)
  26   (load (make-pathname :type "fasl" :defaults *gen-target*)))
  27