cn3d/PKGBUILD

   1 # Maintainer: leepesjee <lpeschier at xs4all dot nl>
   2 # Contributor: Corex
   3 pkgname=cn3d
   4 pkgver=4.2
   5 pkgrel=4
   6 pkgdesc="A visualization tool for biomolecular structures, sequences, and sequence alignments."
   7 arch=('i686' 'x86_64')
   8 license=('custom')
   9 url="http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml"
  10 depends=('wxwidgets-ncbi>=2.8.10-2')
  11 source=(ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/ncbi.tar.gz
  12         ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/CURRENT/ncbi_cxx--May_15_2009.tar.gz
  13         context.cpp1.patch
  14         context.cpp2.patch
  15         cn3d
  16         cn3d.desktop
  17         ncbi.license)
  18 md5sums=('7f6dcedc378dfd726933912b7ce6cb1e'
  19          'abf0f63132f270c363531ad0b486aac3'
  20          '76991ac1558545183170568f8af5e015'
  21          'bc4daf71c6eacce269edfd017de05cef'
  22          '6a4c7b3ffcf331341e3cdb3a6b71ee10'
  23          'e8bf6ba0d335e27c312bc39ff7b485b9'
  24          '8cdf51908efacc8a8b055593fa063d09')
  25
  26 build() {
  27 # make the C++ toolkit
  28   cd $srcdir/ncbi_cxx*
  29   patch -Np1 -i ../../context.cpp1.patch
  30   patch -Np1 -i ../../context.cpp2.patch
  31   ./configure --prefix=/$pkgdir/usr --without-debug --with-wxwidgets=/opt/ncbi/wxwidgets-ncbi --with-mesa --with-opengl \
  32               --without-internal --without-boost --without-ctools 2>&1 | tee ../out.confcpp.txt
  33   make
  34   cd ./GCC*-Release*/build/app/cn3d
  35   make LDFLAGS="-lGLU -lGL"
  36
  37 # install the package in /opt
  38   install -dv -m755 $pkgdir/opt/ncbi/data
  39   install -dv -m755 $pkgdir/opt/ncbi/bin
  40   install -m755 $srcdir/ncbi_cxx*/GCC*-Release*/bin/$pkgname $pkgdir/opt/ncbi/bin
  41   install -m644 $srcdir/ncbi/data/* $pkgdir/opt/ncbi/data
  42   install -m644 $srcdir/ncbi_cxx*/src/app/$pkgname/cn3d_commands.htb $pkgdir/opt/ncbi/bin
  43   cd $pkgdir/opt/ncbi/bin
  44   ln -s ../data
  45
  46 # install a start script in /usr/bin
  47   cd $startdir
  48   install -dv -m755 $pkgdir/usr/bin
  49   install -m755 cn3d $pkgdir/usr/bin
  50
  51 # Install license
  52   install -dv -m755 $pkgdir/usr/share/licenses/$pkgname
  53   install -m644 ncbi.license $pkgdir/usr/share/licenses/$pkgname
  54
  55 # install icon
  56   install -m755 -d ${pkgdir}/usr/share/pixmaps
  57   install -m644 $srcdir/ncbi_cxx*/src/app/${pkgname}/cn3d42App.xpm ${pkgdir}/usr/share/pixmaps
  58   install -m755 -d ${pkgdir}/usr/share/applications
  59   install -m644 ${pkgname}.desktop ${pkgdir}/usr/share/applications/
  60 }