BUG: UListIO: byteSize overflowing on really big faceLists

[OpenFOAM-2.0.x.git] / src / OpenFOAM / algorithms / indexedOctree / indexedOctree.H

/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.

    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.

    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.

Class
    Foam::indexedOctree

Description
    Non-pointer based hierarchical recursive searching

SourceFiles
    indexedOctree.C

\*---------------------------------------------------------------------------*/

#ifndef indexedOctree_H
#define indexedOctree_H

#include "treeBoundBox.H"
#include "pointIndexHit.H"
#include "FixedList.H"
#include "Ostream.H"
#include "HashSet.H"
#include "labelBits.H"
#include "PackedList.H"

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

namespace Foam
{

// Forward declaration of classes
template<class Type> class indexedOctree;
template<class Type> Ostream& operator<<(Ostream&, const indexedOctree<Type>&);
class Istream;


/*---------------------------------------------------------------------------*\
                        Class indexedOctreeName Declaration
\*---------------------------------------------------------------------------*/

TemplateName(indexedOctree);


/*---------------------------------------------------------------------------*\
                           Class indexedOctree Declaration
\*---------------------------------------------------------------------------*/

template <class Type>
class indexedOctree
:
    public indexedOctreeName
{
public:

    // Data types

        //- volume types
        enum volumeType
        {
            UNKNOWN = 0,
            MIXED = 1,
            INSIDE = 2,
            OUTSIDE = 3
        };


        //- Tree node. Has up pointer and down pointers.
        class node
        {
        public:

            //- Bounding box of this node
            treeBoundBox bb_;

            //- parent node (index into nodes_ of tree)
            label parent_;

            //- IDs of the 8 nodes on all sides of the mid point
            FixedList<labelBits, 8> subNodes_;

            friend Ostream& operator<< (Ostream& os, const node& n)
            {
                return os << n.bb_ << token::SPACE
                    << n.parent_ << token::SPACE << n.subNodes_;
            }

            friend Istream& operator>> (Istream& is, node& n)
            {
                return is >> n.bb_ >> n.parent_ >> n.subNodes_;
            }

            friend bool operator==(const node& a, const node& b)
            {
                return
                    a.bb_ == b.bb_
                 && a.parent_ == b.parent_
                 && a.subNodes_ == b.subNodes_;
            }

            friend bool operator!=(const node& a, const node& b)
            {
                return !(a == b);
            }
        };


private:

    // Static data

        //- Relative peturbation tolerance. Determines when point is
        //  considered to be close to face/edge of bb of node.
        //  The tolerance is relative to the bounding box of the smallest
        //  node.
        static scalar perturbTol_;


    // Private data

        //- Underlying shapes for geometric queries.
        const Type shapes_;

        //- List of all nodes
        List<node> nodes_;

        //- List of all contents (referenced by those nodes that are contents)
        labelListList contents_;

        //- Per node per octant whether is fully inside/outside/mixed.
        mutable PackedList<2> nodeTypes_;

    // Private Member Functions

        //- Helper: does bb intersect a sphere around sample? Or is any
        //  corner point of bb closer than nearestDistSqr to sample.
        //  (bb is implicitly provided as parent bb + octant)
        static bool overlaps
        (
            const treeBoundBox& parentBb,
            const direction octant,
            const scalar nearestDistSqr,
            const point& sample
        );

        // Construction

            //- Split list of indices into 8 bins
            //  according to where they are in relation to mid.
            void divide
            (
                const labelList& indices,
                const treeBoundBox& bb,
                labelListList& result
            ) const;

            //- Subdivide the contents node at position contentI.
            //  Appends to contents.
            node divide
            (
                const treeBoundBox& bb,
                DynamicList<labelList>& contents,
                const label contentI
            ) const;

            //- Split any contents node with more than minSize elements.
            void splitNodes
            (
                const label minSize,
                DynamicList<node>& nodes,
                DynamicList<labelList>& contents
            ) const;

            static label compactContents
            (
                DynamicList<node>& nodes,
                DynamicList<labelList>& contents,
                const label compactLevel,
                const label nodeI,
                const label level,
                List<labelList>& compactedContents,
                label& compactI
            );

            //- Determine inside/outside per node (mixed if cannot be
            //  determined). Only valid for closed shapes.
            volumeType calcVolumeType(const label nodeI) const;

            //- Search cached volume type.
            volumeType getVolumeType(const label nodeI, const point&) const;


        // Query

            //- Find nearest point to line.
            void findNearest
            (
                const label nodeI,
                const linePointRef& ln,

                treeBoundBox& tightest,
                label& nearestShapeI,
                point& linePoint,
                point& nearestPoint
            ) const;

            //- Return bbox of octant
            treeBoundBox subBbox
            (
                const label parentNodeI,
                const direction octant
            ) const;

            //- Helper: take a point on/close to face of bb and push it
            //  inside or outside of bb.
            static point pushPoint
            (
                const treeBoundBox&,
                const point&,
                const bool pushInside
            );

            //- Helper: take a point on face of bb and push it
            //  inside or outside of bb.
            static point pushPoint
            (
                const treeBoundBox&,
                const direction,
                const point&,
                const bool pushInside
            );

            //- Helper: take point on face(s) of bb and push it away from
            //  edges of face.
            static point pushPointIntoFace
            (
                const treeBoundBox& bb,
                const vector& dir,          // end-start
                const point& pt
            );

            ////- Push point on multiple faces away from any corner/edge.
            //static void checkMultipleFaces
            //(
            //    const treeBoundBox& bb,
            //    const vector& dir,          // end-start
            //    pointIndexHit& faceHitInfo,
            //    direction& faceID
            //);

            //- Walk to parent of node+octant.
            bool walkToParent
            (
                const label nodeI,
                const direction octant,

                label& parentNodeI,
                label& parentOctant
            ) const;

            //- Walk tree to neighbouring node. Return false if edge of tree
            //  hit.
            bool walkToNeighbour
            (
                const point& facePoint,
                const direction faceID,         // direction to walk in
                label& nodeI,
                direction& octant
            ) const;

            //- Debug: return verbose the bounding box faces
            static word faceString(const direction faceID);

            //- Traverse a node. If intersects a triangle return first
            // intersection point.
            // findAny=true : return any intersection
            // findAny=false: return nearest (to start) intersection
            void traverseNode
            (
                const bool findAny,
                const point& treeStart,
                const vector& treeVec,

                const point& start,
                const point& end,
                const label nodeI,
                const direction octantI,

                pointIndexHit& hitInfo,
                direction& faceID
            ) const;

            //- Find any or nearest intersection
            pointIndexHit findLine
            (
                const bool findAny,
                const point& treeStart,
                const point& treeEnd,
                const label startNodeI,
                const direction startOctantI,
                const bool verbose = false
            ) const;

            //- Find any or nearest intersection of line between start and end.
            pointIndexHit findLine
            (
                const bool findAny,
                const point& start,
                const point& end
            ) const;

            //- Find all elements intersecting box.
            void findBox
            (
                const label nodeI,
                const treeBoundBox& searchBox,
                labelHashSet& elements
            ) const;


            template <class CompareOp>
            static void findNear
            (
                const scalar nearDist,
                const bool okOrder,
                const indexedOctree<Type>& tree1,
                const labelBits index1,
                const treeBoundBox& bb1,
                const indexedOctree<Type>& tree2,
                const labelBits index2,
                const treeBoundBox& bb2,
                CompareOp& cop
            );


        // Other

            //- Count number of elements on this and sublevels
            label countElements(const labelBits index) const;

            //- Dump node+octant to an obj file
            void writeOBJ(const label nodeI, const direction octant) const;

            //- From index into contents_ to subNodes_ entry
            static labelBits contentPlusOctant
            (
                const label i,
                const direction octant
            )
            {
                return labelBits(-i - 1, octant);
            }

            //- From index into nodes_ to subNodes_ entry
            static labelBits nodePlusOctant
            (
                const label i,
                const direction octant
            )
            {
                return labelBits(i + 1, octant);
            }

            //- From empty to subNodes_ entry
            static labelBits emptyPlusOctant
            (
                const direction octant
            )
            {
                return labelBits(0, octant);
            }

public:

        //- Get the perturbation tolerance
        static scalar& perturbTol();


    // Constructors

        //- Construct null
        indexedOctree(const Type& shapes);

        //- Construct from components
        indexedOctree
        (
            const Type& shapes,
            const List<node>& nodes,
            const labelListList& contents
        );

        //- Construct from shapes
        indexedOctree
        (
            const Type& shapes,
            const treeBoundBox& bb,
            const label maxLevels,          // maximum number of levels
            const scalar maxLeafRatio,      // how many elements per leaf
            const scalar maxDuplicity       // in how many leaves is a shape on
                                            // average
        );

        //- Construct from Istream
        indexedOctree(const Type& shapes, Istream& is);

        //- Clone
        autoPtr<indexedOctree<Type> > clone() const
        {
            return autoPtr<indexedOctree<Type> >
            (
                new indexedOctree<Type>(*this)
            );
        }

    // Member Functions

        // Access

            //- Reference to shape
            const Type& shapes() const
            {
                return shapes_;
            }

            //- List of all nodes
            const List<node>& nodes() const
            {
                return nodes_;
            }

            //- List of all contents (referenced by those nodes that are
            //  contents)
            const labelListList& contents() const
            {
                return contents_;
            }

            //- Top bounding box
            const treeBoundBox& bb() const
            {
                if (nodes_.empty())
                {
                    FatalErrorIn("indexedOctree<Type>::bb() const")
                        << "Tree is empty" << abort(FatalError);
                }
                return nodes_[0].bb_;
            }


        // Conversions for entries in subNodes_.

            static bool isContent(const labelBits i)
            {
                return i.val() < 0;
            }

            static bool isEmpty(const labelBits i)
            {
                return i.val() == 0;
            }

            static bool isNode(const labelBits i)
            {
                return i.val() > 0;
            }

            static label getContent(const labelBits i)
            {
                if (!isContent(i))
                {
                    FatalErrorIn("getContent(const label)")
                        << abort(FatalError);
                }
                return -i.val()-1;
            }

            static label getNode(const labelBits i)
            {
                if (!isNode(i))
                {
                    FatalErrorIn("getNode(const label)")
                        << abort(FatalError);
                }
                return i.val() - 1;
            }

            static direction getOctant(const labelBits i)
            {
                return i.bits();
            }


        // Queries

            //- Calculate nearest point on nearest shape.
            //  Returns
            //  - bool : any point found nearer than nearestDistSqr
            //  - label: index in shapes
            //  - point: actual nearest point found
            pointIndexHit findNearest
            (
                const point& sample,
                const scalar nearestDistSqr
            ) const;

            //- Low level: calculate nearest starting from subnode.
            void findNearest
            (
                const label nodeI,
                const point&,

                scalar& nearestDistSqr,
                label& nearestShapeI,
                point& nearestPoint
            ) const;

            //- Find nearest to line.
            //  Returns
            //  - bool : any point found?
            //  - label: index in shapes
            //  - point: actual nearest point found
            //  sets:
            //  - linePoint : corresponding nearest point on line
            pointIndexHit findNearest
            (
                const linePointRef& ln,
                treeBoundBox& tightest,
                point& linePoint
            ) const;

            //- Find nearest intersection of line between start and end.
            pointIndexHit findLine
            (
                const point& start,
                const point& end
            ) const;

            //- Find any intersection of line between start and end.
            pointIndexHit findLineAny
            (
                const point& start,
                const point& end
            ) const;

            //- Find (in no particular order) indices of all shapes inside or
            //  overlapping bounding box (i.e. all shapes not outside box)
            labelList findBox(const treeBoundBox& bb) const;

            //- Find deepest node (as parent+octant) containing point. Starts
            //  off from starting index in nodes_ (use 0 to start from top)
            //  Use getNode and getOctant to extract info, or call findIndices.
            labelBits findNode(const label nodeI, const point&) const;

            //- Find shape containing point. Only implemented for certain
            //  shapes.
            label findInside(const point&) const;

            //- Find the shape indices that occupy the result of findNode
            const labelList& findIndices(const point&) const;

            //- Determine type (inside/outside/mixed) for point. unknown if
            //  cannot be determined (e.g. non-manifold surface)
            volumeType getVolumeType(const point&) const;

            //- Helper function to return the side. Returns outside if
            //  outsideNormal&vec >= 0, inside otherwise
            static volumeType getSide
            (
                const vector& outsideNormal,
                const vector& vec
            );

            //- Helper: does bb intersect a sphere around sample? Or is any
            //  corner point of bb closer than nearestDistSqr to sample.
            static bool overlaps
            (
                const point& bbMin,
                const point& bbMax,
                const scalar nearestDistSqr,
                const point& sample
            );

            //- Find near pairs and apply CompareOp to them.
            //  tree2 can be *this or different tree.
            template <class CompareOp>
            void findNear
            (
                const scalar nearDist,
                const indexedOctree<Type>& tree2,
                CompareOp& cop
            ) const;


        // Write

            //- Print tree. Either print all indices (printContent = true) or
            //  just size of contents nodes.
            void print
            (
                prefixOSstream&,
                const bool printContents,
                const label
            ) const;

            bool write(Ostream& os) const;


    // IOstream Operators

        friend Ostream& operator<< <Type>(Ostream&, const indexedOctree<Type>&);
};


// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

} // End namespace Foam

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

#ifdef NoRepository
#   include "indexedOctree.C"
#endif

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

#endif

// ************************************************************************* //