docs/source/docs/index.md

   1 # Subcommands
   2
   3 This section provides detailed documentation for each subcommand in
   4 MACS3. Use `macs3 --help` to see the list of subcommands.
   5
   6 ```{toctree}
   7 :maxdepth: 2
   8
   9 callpeak.md
  10 callvar.md
  11 hmmratac.md
  12 bdgbroadcall.md
  13 bdgcmp.md
  14 bdgdiff.md
  15 bdgopt.md
  16 bdgpeakcall.md
  17 cmbreps.md
  18 filterdup.md
  19 pileup.md
  20 predictd.md
  21 randsample.md
  22 refinepeak.md