repo.or.cz
/
MACS.git
/
blob
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
blame
|
history
|
raw
|
HEAD
update docs
[MACS.git]
/
docs
/
source
/
docs
/
subcommands_index.md
blob
ae514effa4082025118bdf3b7ced50b355c17311
1
# Subcommands
2
3
This section provides detailed documentation for each subcommand in
4
MACS3. Use `macs3 --help` to see the list of subcommands.
5
6
```{toctree}
7
:maxdepth: 2
8
9
callpeak.md
10
callvar.md
11
hmmratac.md
12
bdgbroadcall.md
13
bdgcmp.md
14
bdgdiff.md
15
bdgopt.md
16
bdgpeakcall.md
17
cmbreps.md
18
filterdup.md
19
pileup.md
20
predictd.md
21
randsample.md
22
refinepeak.md